Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 288 1e-72 >seq3 Length=1410883 Score = 288 bits (318), Expect = 1e-72 Identities = 1177/1839 (64%), Gaps = 35/1839 (2%) Strand=Plus/Minus Query 75416 TAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTG 75475 ||||||||||| || || | ||| |||| |||||||||||||| || | ||| Sbjct 803302 TAGTACATACCGGTCTTCAACCCCTTCTTCCAACCGTAGAAATGCATCGAGGTCAACTTG 803243 Query 75476 GAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCT 75535 | || || || ||||| || | |||||| ||| ||||||||||| | Sbjct 803242 CCCATGGTAGGGTCTTTGATGTGAATGTTGAGCGACTGTGATTGGTCGATGAAAGCAGAT 803183 Query 75536 CTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACT 75595 || || || ||||| | || || |||||| | || ||||| | |||||| | | | Sbjct 803182 CTGTCGGCTGCCATGTCGATGATATGCTTTTGGGATATCTCCCACACGGTTTTGTACAAT 803123 Query 75596 TGTTTGATATCATCTGGAAGATTTGTATT---TTGAATGGATCCGCCATCAGATATAATT 75652 ||||||| |||||||||| || | ||| || || ||| || || || || Sbjct 803122 TGTTTGAGCTCATCTGGAATGTTGGGCAACGATTGGATCGAACCGTTATTTGAAATGATA 803063 Query 75653 GTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGA 75712 |||| || || | || ||||| | | | ||| | | | | | || Sbjct 803062 TTATTTTTCATATTGTCGTTCCAAAGACCCAAATTGACCAAATCCTTCAACAAGTATGGG 803003 Query 75713 TTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGT 75772 || || ||||| || || |||| ||||||||||| | ||| || || || ||||| Sbjct 803002 TTGACTATTTGGAACTCACCAGCCAATACTCTTCTCGAGTAGATGTTCGAAGTGTATGGC 802943 Query 75773 TCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACC 75832 || | |||| ||||| || |||||||| | || || ||||| |||||||| || || Sbjct 802942 TCAAAGCATTCGTTGTTGCCTAAAATTTGCGAGGTGGACGCAGTAGGCATAGGAGCAACA 802883 Query 75833 AATAAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAA-TCCCA 75891 | || ||||| | |||||| || || || | || | || | ||| | ||||| Sbjct 802882 AGCAATGAGTTTCTCAAACCATGCTTTGCCATGTTTTGCTTCA-ATGTGTCCCAGTCCCA 802824 Query 75892 AAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGA 75951 | || | || ||||| | || || || | | || || || || Sbjct 802823 CAATTCGGTAGGCTTTCTGTCCCACAAGTCATACTGCAAGAGACCCTTCGATGCTGGGGA 802764 Query 75952 TCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGC 76011 || | || || ||||| ||||| || ||| || | || ||||| | || Sbjct 802763 GCCTTCGTAGGTCTCGTATGTCCCTTCGACTTCTGCCAACTCAATGGATGCCTCCACAGC 802704 Query 76012 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAA 76071 ||| | || ||||| || || || | | || | || ||||| || ||| || Sbjct 802703 ACCATGGTAGATTGTCTCAAAGATTTGAATGTTCAATTCCCTGGCTTCTTGAGAATCGAA 802644 Query 76072 AGGATAATGTAAAAGA-ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTC 76130 || || | |||| || || ||||| ||||| || || || || | | |||| |||| Sbjct 802643 TGGC-AACCTCAAAGCCATGAAGGCATCGGCTAGACCTTGGACACCGACAGCAATTGGTC 802585 Query 76131 TATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTT 76190 | |||||| | || || | | |||||||||| || ||||||||| || || ||| Sbjct 802584 TGTGTCTCATGTTAGATCTCTTTGCTTCTGGAACGGGATAATAATTACGGTCAATGATTC 802525 Query 76191 TATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----- 76245 | || | || | || ||||| | || | ||||| ||||| | | Sbjct 802524 TGTTCAAGTTACGAGTGACGGCTTTACTTATATCGTGAAGTTTTTCAAAATTATACCAGG 802465 Query 76246 TT----TTCCATCTATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGG 76298 || | |||| || ||||| | | | ||||||||| | ||||| || | Sbjct 802464 TTGAAGTAGCATCACTCTCGACAAATGCAGGCAAGGATATAGATGCCAAGTTACATACAG 802405 Query 76299 CTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAG 76358 | ||||||| | | | |||| | ||||| || | ||| | || ||| Sbjct 802404 CAACCTCATCTGGAGCAGAGTATTCAACAATCTCGCAACACAAATTGGATGATTTAATAA 802345 Query 76359 TTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAG 76418 | || | ||| | |||||| |||| |||||||||| || |||||||| | || |||| Sbjct 802344 TACCCAAATTCTTTTGGTTAGTCTTCTTGTTACATGCATCTTTATAAAGCATGAATGGAG 802285 Query 76419 TTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTAT 76476 | || || || | || | || | |||| | ||| | ||| || ||| || | Sbjct 802284 TACCTGTCTCTGTTTGAGCCTCTAAGATAGCATACCATA--ACTTCTGAGCCTTGAC--- 802230 Query 76477 AGATTTGTAT----CGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTC 76532 | | ||| | || || |||||||| |||| | || ||| ||| || ||||| | Sbjct 802229 -GGTCTGTCTTCCACGGTTTTCTCTTTCGTATTTTTCGTACAACTCTTCGAACTCATCGC 802171 Query 76533 CCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTT 76592 | | ||| |||| || ||| |||||| || | | ||| | ||| || || || Sbjct 802170 CGAATTTGTCAGCCAAGCCTGGAGCTTCATTGGGGGAAAACAAAGTCCATTCTTTATTTT 802111 Query 76593 CCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTC 76652 || || | |||||| || | |||||| ||||| | ||| ||||| |||| || || Sbjct 802110 GCTCTACTCTTTTCATGAACAAATCAGGGATCCACAAAGCTGGAAATAAGTCTCTGGCTC 802051 Query 76653 TACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCC 76712 | |||||| || || |||||| ||| || | ||| || | |||||| | ||||| Sbjct 802050 TGTTTTCTTCCTTACCGTGATTCTTCCTAATGTCAACGAAATCAAAAATATCTGCATGCC 801991 Query 76713 ATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATC 76772 ||||||| | || | || | |||| |||| ||| || || || ||||| | || | Sbjct 801990 ATGGTTCGATGTACAAAGCAAAGGCACCAGGTCTTTTGTTTCCACCTTGATCCACGTAAC 801931 Query 76773 TGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTC 76832 || ||||| ||| | || | | ||| |||||||| ||||| || ||||| || |||| Sbjct 801930 GAGCTGTGTTGTTAAAGACGCGAACCATGGGAATAATACCGTTGGAGGTACCGTTGGTTC 801871 Query 76833 CAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCA 76892 | | ||| || || || |||||||||| || | || || || || || Sbjct 801870 CGGCAATGTAGGCACCCGTTGAACGAATATTATGGATGTGCAAACCAATACCACCAGCAC 801811 Query 76893 TTTTAGAGATTAGAGCACAGCGT-TTCAATGTGTCATAGATGCCCTCTATACTATCATCC 76951 | || || || | |||||| ||| ||||| ||||||||||| || || || || ||| Sbjct 801810 TCTTGGAAATCAAAGCACA-CGTCTTCAACGTGTCATAGATACCGTCGATGGAGTCTTCC 801752 Query 76952 ATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAAT 77011 ||||| || | || || ||||||||| | || || || ||||| ||||| Sbjct 801751 TTCATGGCAACCAAGAAGCACGAAGACATTTGTGGTTGTGGTGTACCAGCATTGAACAAG 801692 Query 77012 GTAGGAGATGCATGAGTGAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAACTGC 77070 || || || ||||| ||||| || ||| ||| | ||| |||||| || |||||||| Sbjct 801691 GTTGGGGAAGCATGTGTGAAGTATCTTTGAGACATGTA-ATTGTAAGTCTCAATAACCCG 801633 Query 77071 TTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTC 77130 | ||||| | |||||| || | ||| || | ||| | || || ||||||| || Sbjct 801632 TGGGATATCATCTCTATGAATACCAATAGCAACTCTCATAATCAAGTGTTGAGGTCTCTC 801573 Query 77131 TACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATA 77190 || |||| | | ||||| ||||| ||| | || || || || ||||| || || Sbjct 801572 GGCAACCTTACCGTCAACCTTCAATAAGTAAGATCTCTCTAACGTCTTGAAACCGAAGTA 801513 Query 77191 GTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATT 77229 |||||| ||||| | ||| ||| |||| | || || Sbjct 801512 GTTGTAGTTGAAGTCGCGATCGAAAACAATAGCAGAGTT 801474 Score = 259 bits (286), Expect = 7e-64 Identities = 596/893 (67%), Gaps = 10/893 (1%) Strand=Plus/Minus Query 46326 CATAACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 46385 ||| ||||| ||||| || |||| || | || || ||||| || ||||| || | Sbjct 929460 CATTACTCCTGCCTTTTGATAGTCACTGACTCTCTTTTCAAAAAAGTTGGTTTTACCAGC 929401 Query 46386 CAATGATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCC 46445 ||| || || |||||||| |||||||| ||||| |||||||| || | |||| || Sbjct 929400 CAAGGAGATGTTTTCCATGAAATCAAAAGGATTTGTAACATTGTACACCTTTTCGTTACC 929341 Query 46446 TAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATT 46505 || | | | |||||||||||| ||||| | ||| ||||| | ||| Sbjct 929340 CAAAGCAACTAATAATCTATCTGCAACAAATTCGACATATTGACACATCAAGCTGCTATT 929281 Query 46506 CATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGC 46565 ||| || | | ||| |||| || || || | ||| || | |||||| || || || Sbjct 929280 CATACCCAACAAAGAGACAGGTAATGCATCGGTGAAAAATTCCTTTTCAATGGTAACGGC 929221 Query 46566 ATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACAT 46625 || | || ||| || |||| || |||| | |||||| |||| Sbjct 929220 TTCGGTGATAATCCTCTCAACAATTTCTGCATCTGGTCTGTTTTGCAAATGAGAGAACAA 929161 Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 ||| || ||||| ||| ||| | ||||||||||| | ||| ||||||||||| ||||| Sbjct 929160 TAAGCAAGCAAAGTCAGTATGTAAACCTTCATCTCTGCAAATCAATTCGTTAGAGAATGT 929101 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 || || ||||| | || | ||| || | ||| || |||| || || || ||| || Sbjct 929100 AAGACCTGGCATCATACCTCTCTTCTTCAACCAGAAGATAGATGCAAATGAACCACTGAA 929041 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA-ACTG--GCATCATT 46802 ||| || || || ||||| ||||| || ||||| | || ||| | | || | |||| Sbjct 929040 GAAAATACCCTCAACAGCAGCGAAAGCAACAAGACGTTCACCGAATAATGCATCTTCATC 928981 Query 46803 ATGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGC 46862 | ||||| || |||||| |||||||| ||||| | ||| || || | || || || Sbjct 928980 GTTGATCCATCTCAAAGCCCAGTCAGCCTTCTTCTTGATACATGGAATGTTGTCAATTGC 928921 Query 46863 ATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATA 46922 |||||| | ||||| || | ||| || | ||| ||||| || || | | || Sbjct 928920 ATTAAACAAAAAGTCAGCCTCTTTTGGATCCTTGATATAGGTATCAATCAATAAAGAGTA 928861 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 ||||||| || || || || || || |||||||| ||||| ||| | ||||| | Sbjct 928860 GGTTTCTGAGTGGATATTCTCCATCATGATTTGAAATCCATAAAAGCATTTGGCTTCTGG 928801 Query 46983 AATCTGTACCTCTG--TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTA 47040 || || || || | | ||| || ||| ||| ||||| || || || |||||| Sbjct 928800 AACTTGAACTTCAGCTGAGAAATTC--TCAACCAAGTTCTCGTTGACAATACCATCAGAT 928743 Query 47041 GCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTT---A 47097 |||||||| || || || | | ||| ||| | |||||| | | | | || Sbjct 928742 GCAGCAAAGAAAGCTAAGATTCTTGAAATGAAAAACCTTTCATTGTCATTTAACTTGTCC 928683 Query 47098 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCT 47157 |||||||||| | || || | || | ||| ||||| ||||| ||||| ||||| Sbjct 928682 TTCCAGTCATGCAAGTCCTTACCCAAGTCAATTTCCTCAGCAGTCCAAAATGAAGCCTCA 928623 Query 47158 GCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 |||||||| ||||| | ||| || || ||||| ||| ||||| | |||||| Sbjct 928622 GCTTTTTTGTACATTTGCCAGATTTCGTGATATCTGATTGGAAACAAAACAAA 928570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712934319794880