Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq8 111 4e-19 seq3 111 4e-19 >seq8 Length=1028784 Score = 111 bits (122), Expect = 4e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || || ||||| |||||||| || | ||| ||||| || ||||||| Sbjct 325921 ATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCGTCTTCTAATTG 325862 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| |||||||| || | || || ||||| | | ||| |||||||| ||||||||||| Sbjct 325861 TTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGAATTTT 325802 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||| | || | |||| ||| ||| || || | ||||| || || || || Sbjct 325801 ACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAATGGTCTTACCAGT 325742 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| ||||| Sbjct 325741 CAAAGTCTTGACGAAGATTTGCAT 325718 Score = 107 bits (118), Expect = 4e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||| | |||||| || |||||||||||||| |||| || ||||| || Sbjct 325705 TCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTTCC 325646 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||| | ||| || ||||| || | || |||||||| | | || |||||||| Sbjct 325645 GTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTT 325586 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 ||||| || || ||||| | || | | |||| || || || || | ||||| Sbjct 325585 ATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAAT 325526 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| || || || | |||||| ||||||| |||||| Sbjct 325525 AGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCATT 325489 Score = 107 bits (118), Expect = 4e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || || ||||| || ||||| || | || ||||| || ||||| | Sbjct 326605 ATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTCTTCCAATTG 326546 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| || | ||| |||||||| | | || |||||||| ||||| || || Sbjct 326545 TTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGGATCTT 326486 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | |||| || ||| ||||| | |||||||||||| || || Sbjct 326485 ACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTTCCAGT 326426 Query 152081 GAGAGTCTTCACGAAGACCTGCAT 152104 | |||||| ||||||| ||||| Sbjct 326425 CAAAGTCTTGACGAAGATTTGCAT 326402 >seq3 Length=1410883 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | ||| | |||||||| ||||||||||| || || | || ||||| || Sbjct 317567 TCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAGGTTCTGCC 317626 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| | ||| || |||||||| | || ||||| || | | || |||||||| Sbjct 317627 ATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTT 317686 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||||||||||| |||||| | || | |||| || || || || | ||||| Sbjct 317687 GTCTTGAATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAAT 317746 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||| || || || | |||||| ||||| | ||||| || Sbjct 317747 AGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATGTT 317785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820666950039