Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq8 156 9e-33 seq3 147 5e-30 >seq8 Length=1028784 Score = 156 bits (172), Expect = 9e-33 Identities = 162/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| |||||| ||| ||| ||||| ||||||||||| | |||| || | || || || Sbjct 326382 ACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAG-GTTCTTCCGTCTTC 326324 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | |||||| ||||||||||| || | ||||||||| || ||||| ||||| ||||| Sbjct 326323 CAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTG 326264 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 |||||| || ||| | |||||||| || |||| || ||||| | |||||| || || Sbjct 326263 GATCTTACTCTTGACGTTGTCGATAGTATCAGAAGACTCAACTTCCAAAGTGATTGTTTT 326204 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 326203 TCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 150 bits (166), Expect = 4e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| ||| ||| ||||| ||||||||||||| | || | ||| || ||| Sbjct 325926 ACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAATGTTCTGCCGTCTTCT 325867 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| ||||| || || || | ||||||||| || ||||| ||||| ||||| Sbjct 325866 AATTGTTTACCGGCGAAAATTAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGA 325807 Query 283011 ATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || ||| || || ||| | ||||| ||||| |||| ||||| || | || || ||||| Sbjct 325806 AT-TTTACTCTTGACGTTGTCGATTGTGTCGGAAGACTCGACCTCTAAGGTAATGGTCTT 325748 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||| ||||||||||| ||||| || ||||| Sbjct 325747 ACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 143 bits (158), Expect = 6e-29 Identities = 157/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 282896 ATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTCTAGTT 282954 |||||| || ||| ||||||||||||||||| | |||| || | || || || | || Sbjct 325693 ATGTAAAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAG-GTTCTTCCGTCTTCCAATT 325635 Query 282955 GTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCT 283014 |||| || || || ||||| | ||| ||||| |||||||| ||||| |||||||||| Sbjct 325634 GTTTACCAGCGAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTATCTTGGATCT 325575 Query 283015 TTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCG 283074 | || ||| | ||||| ||||| || | |||||| || | || || |||||||| | Sbjct 325574 TACTCTTGACGTTGTCGATGGTGTCAGAGGATTCGACCTCCAAGGTAATAGTCTTACCTG 325515 Query 283075 TCAAAGTCTTAACGAATATCTGCATT 283100 | |||||||||||||| || |||||| Sbjct 325514 TTAAAGTCTTAACGAAGATTTGCATT 325489 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| || ||| ||||| ||||||||||| | | || | ||| || ||| Sbjct 326154 ACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTAGTCTGATAATGTTCTGCCGTCTTCT 326095 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || || || ||||| | ||||||||| || ||||| ||||| |||||| Sbjct 326094 AATTGTTTACCAGCGAAAATCAATCTTTGTTGGTCTGGTGGGATACCTTCCTTATCTTGG 326035 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || ||| | || |||||||| || | || ||||| | |||||| || || Sbjct 326034 ATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTGATTGTTTTT 325975 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 325974 CCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 Score = 125 bits (138), Expect = 1e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCT 282950 |||| |||||| ||| ||| ||||| || |||||||| | | || | || || || Sbjct 326610 ACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGACAATGTTCTACCGTCTTCC 326551 Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 | |||||| || || || ||||| | ||| ||||| |||||||| ||||| |||||| Sbjct 326550 AATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGAATACCTTCCTTATCTTGG 326491 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || | || |||||||| || | || ||||| | ||| || || || Sbjct 326490 ATCTTACTCTTGACATTGTCAATAGTGTCAGAGGACTCAACTTCCAAAGTAATAGTTTTT 326431 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||||||||| ||||| || ||||| Sbjct 326430 CCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 >seq3 Length=1410883 Score = 147 bits (162), Expect = 5e-30 Identities = 163/215 (76%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 282891 ACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-CAAGCGTGCGGCCATCCTC 282949 |||| ||| || || || ||||||||||| ||||||| |||| || | |||||| || Sbjct 317574 ACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGACAAG-GTTCTGCCATCTTC 317632 Query 282950 TAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTG 283009 | ||||| || || ||||| || | ||| || ||| |||||||| ||||||||||| Sbjct 317633 CAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGGAATACCTTCCTTGTCTTG 317692 Query 283010 GATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTT 283069 || |||| || || | || |||||||| || | |||||| || | || || ||||| Sbjct 317693 AATTTTTGACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAGGTAATAGTCTT 317752 Query 283070 ACCCGTCAAAGTCTTAACGAATATCTGCATTTTCA 283104 ||| || |||||||||||||| || ||||| |||| Sbjct 317753 ACCTGTTAAAGTCTTAACGAAAATTTGCATGTTCA 317787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739079297886