Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq8 120 2e-22 seq3 102 6e-17 >seq8 Length=1028784 Score = 120 bits (132), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| || | || | || ||||||||||||||||| Sbjct 325723 TTGCATACCACCTCTCAATCTCAAGACTAAATGTAAAGTAGATTCCTTTTGGATGTTGTA 325664 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | | |||| |||| || || || || || ||||| | ||||| | Sbjct 325663 GTCGGACAAGGTTCTTC-CGTCTTCCAATTGTTTACCAGCGAAAATCAATCTTTGCTGGT 325605 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 ||| ||| | ||||||||| || ||||| ||| | | | |||||||| | || Sbjct 325604 CTGGAGGAATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATGGTGTCAGAGG 325545 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| ||||||| ||||| ||||| || || | ||||| |||||||||||||| Sbjct 325544 ATTCGACCTCCAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAGATTTGCAT 325490 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| |||| || | ||| |||||||| |||||||| Sbjct 326407 TTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTA 326348 Query 44164 ATCGG-CGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGAT 44222 |||| | || | | |||| |||| || || ||||||||||| || | || || | Sbjct 326347 GTCGGACAAGGTTCTTC-CGTCTTCCAATTGTTTACCGGCAAAGATTAATCTTTGTTGGT 326289 Query 44223 CTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGG 44282 ||| || | ||||||||| || ||||| ||| | | | || || || | | Sbjct 326288 CTGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCGATAGTATCAGAAG 326229 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || |||| || || || ||||| || | ||||| ||||| |||||||| Sbjct 326228 ACTCAACTTCCAAAGTGATTGTTTTTCCGGTCAAAGTCTTGACGAAAATTTGCAT 326174 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| |||| || | ||| |||||||| |||||||| Sbjct 325951 TTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTA 325892 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | | |||| || | || || ||||| || || || | || || || Sbjct 325891 GTCAGATAATGTTCTGCCGTCTTCTAATTGTTTACCGGCGAAAATTAATCTTTGTTGGTC 325832 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || || || ||| | | | || ||||||| || Sbjct 325831 TGGTGGGATACCTTCCTTATCTTGAATTTTACTCTTGACGTTGTCGATTGTGTCGGAAGA 325772 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||||| ||||| || || | ||||| |||||||||||||| Sbjct 325771 CTCGACCTCTAAGGTAATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 325718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || ||||| | ||||| |||| || | ||| |||||||| || ||||| || | Sbjct 326628 CCACCTCTTAACCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATATTGTAGTCCGAC 326569 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 | | | |||| |||| || || || || || ||||| | ||||| |||| || Sbjct 326568 AATGTTCTACCGTCTTCCAATTGTTTACCAGCGAAAATCAACCTTTGCTGGTCTGGTGGA 326509 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCA 44288 | ||||||||| || ||||| ||| || ||| | || ||||| | ||| || | Sbjct 326508 ATACCTTCCTTATCTTGGATCTTACTCTTGACATTGT--CAATAGTGTCAGAGGACTCAA 326451 Query 44289 CCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | |||| ||||| || ||||| || | ||||| |||||||||||||| Sbjct 326450 CTTCCAAAGTAATAGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 326402 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || ||| || ||||||| |||||| |||| || | || |||||||| |||||||| Sbjct 326179 TTGCATACCACCTCTCAATCTCAAAACCAAATGTAAAGTAGATTCCTTTTGAATGTTGTA 326120 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 || | | | | |||| || | || || || || || ||||| | || || || Sbjct 326119 GTCTGATAATGTTCTGCCGTCTTCTAATTGTTTACCAGCGAAAATCAATCTTTGTTGGTC 326060 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGA 44283 || || | ||||||||| || ||||| ||| | | | || ||||| | ||| Sbjct 326059 TGGTGGGATACCTTCCTTATCTTGGATCTTACTCTTGACGTTGTCAATAGTGTCAGAGGA 326000 Query 44284 TTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||| || || || ||||| || | ||||| |||||||||||||| Sbjct 325999 CTCAACTTCCAAAGTGATTGTTTTTCCAGTCAAAGTCTTGACGAAGATTTGCAT 325946 >seq3 Length=1410883 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC-GGC 44169 || ||||||| |||||| |||| || | || ||||||||||||||| || || | | Sbjct 317556 CCACCTCTCAATCTCAAGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAGTCAGAC 317615 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || | || | || |||| ||| || || || ||||| || | |||||||| | || Sbjct 317616 AAGGTTCTGC-CATCTTCCAACTGTTTACCAGCGAAGATTAATCTTTGCTGATCAGGTGG 317674 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCC 44287 | ||||||||| || || || ||| || ||| | || ||||| | |||||| Sbjct 317675 AATACCTTCCTTGTCTTGAATTTTTGACTTGACATTGT--CAATAGTGTCAGAGGATTCG 317732 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| | ||||| ||||| || || | ||||| ||||| ||||||||| Sbjct 317733 ACCTCTAAGGTAATAGTCTTACCTGTTAAAGTCTTAACGAAAATTTGCATG 317783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359990360513553