Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03-
01] 9 sequences; 10,517,128 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq8 150 4e-31
seq3 150 4e-31
>seq8
Length=1028784
Score = 150 bits (166), Expect = 4e-31
Identities = 167/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || ||| | ||||| || || || ||| | ||||| ||| ||| |||
Sbjct 325493 CAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTCTGAC 325552
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| || || || ||||| || ||||| |||||||||
Sbjct 325553 ACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAGCAA 325612
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | || ||||| || ||||| | ||||| ||||| || |||| |||| || ||| |
Sbjct 325613 AGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAAC-CTTGTCCGACTACAACAT 325671
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||||| ||||| || | ||| | || |||||| | |||
Sbjct 325672 CCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGA 325711
Score = 138 bits (152), Expect = 3e-27
Identities = 164/220 (75%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | || |||||||| ||||| | || || || || ||
Sbjct 326177 CAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCTGAT 326236
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| |||||||| ||||| || || || ||||| ||||| || ||||| |||
Sbjct 326237 ACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAACAA 326296
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | ||||| ||||| ||||| | ||||| ||||| || |||| |||| || ||| |
Sbjct 326297 AGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAAC-CTTGTCCGACTACAACAT 326355
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
||||| ||||| || | ||| | ||||||||| | |||
Sbjct 326356 TCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGA 326395
>seq3
Length=1410883
Score = 150 bits (166), Expect = 4e-31
Identities = 167/220 (76%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||||||||| || ||| | ||||| || || || ||| | ||||| ||| ||| |||
Sbjct 317779 CAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCCTCTGAC 317720
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || || ||||| ||| ||||| ||||| ||||| || || || || ||||||
Sbjct 317719 ACTATTGACAATGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTGATCAGCAA 317660
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102
|| | |||||||| || |||||| | |||||||| || || |||| | || |||||| |
Sbjct 317659 AGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAAC-CTTGTCTGACTATAACAT 317601
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||||| || || || ||||| | || |||||| | |||
Sbjct 317600 CCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGA 317561
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731061194746
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |