Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Priceomyces_20haplophilus_20[genbank_20GCA_5F001599895.1_202016-03- 01] 9 sequences; 10,517,128 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8 150 4e-31 seq3 150 4e-31 >seq8 Length=1028784 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || ||| | ||||| || || || ||| | ||||| ||| ||| ||| Sbjct 325493 CAAATCTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTGGAGGTCGAATCCTCTGAC 325552 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| || || || ||||| || ||||| ||||||||| Sbjct 325553 ACCATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAGCAA 325612 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || ||||| || ||||| | ||||| ||||| || |||| |||| || ||| | Sbjct 325613 AGATTGATTTTCGCTGGTAAACAATTGGAAGACGGAAGAAC-CTTGTCCGACTACAACAT 325671 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || | ||| | || |||||| | ||| Sbjct 325672 CCAAAAGGAATCTACTTTACATTTAGTCTTGAGATTGAGA 325711 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || |||||||| ||||| | || || || || || Sbjct 326177 CAAATTTTCGTCAAGACTTTGACCGGAAAAACAATCACTTTGGAAGTTGAGTCTTCTGAT 326236 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||||| || || || ||||| ||||| || ||||| ||| Sbjct 326237 ACTATCGACAACGTCAAGAGTAAGATCCAAGATAAGGAAGGTATCCCACCAGACCAACAA 326296 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | ||||| ||||| ||||| | ||||| ||||| || |||| |||| || ||| | Sbjct 326297 AGATTAATCTTTGCCGGTAAACAATTGGAAGACGGAAGAAC-CTTGTCCGACTACAACAT 326355 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || | ||| | ||||||||| | ||| Sbjct 326356 TCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTGAGA 326395 >seq3 Length=1410883 Score = 150 bits (166), Expect = 4e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | ||||| || || || ||| | ||||| ||| ||| ||| Sbjct 317779 CAAATTTTCGTTAAGACTTTAACAGGTAAGACTATTACCTTAGAGGTCGAATCCTCTGAC 317720 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||| ||||| ||||| ||||| || || || || |||||| Sbjct 317719 ACTATTGACAATGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCACCTGATCAGCAA 317660 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | |||||||| || |||||| | |||||||| || || |||| | || |||||| | Sbjct 317659 AGATTAATCTTCGCTGGTAAACAGTTGGAAGATGGCAGAAC-CTTGTCTGACTATAACAT 317601 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || || || ||||| | || |||||| | ||| Sbjct 317600 CCAAAAGGAGTCTACCTTGCATTTGGTCTTGAGATTGAGA 317561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731061194746