Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000756235.1_202014-09- 18] 6,048 sequences; 11,211,290 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2458 172 5e-38 seq1348 134 1e-26 seq5123 129 5e-25 seq3714 129 5e-25 seq1795 102 8e-17 >seq2458 Length=2360 Score = 172 bits (190), Expect = 5e-38 Identities = 532/815 (65%), Gaps = 15/815 (2%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| ||| ||||| || || || | ||| ||||||||||| Sbjct 1265 GATGCAGCTTGGGTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAA 1206 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || ||||| | || || | || | | ||| || ||| Sbjct 1205 AAATGCATACTTGTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGA 1146 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 |||||| ||| | || | ||||||||||| | | ||| ||||| || || Sbjct 1145 GATTGATCAATATAGACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 1086 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 |||||||| || || |||| | || | | | ||| | | | || |||||| Sbjct 1085 TCCCAAACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACGTTTGGTAAGCCTTGAATG 1026 Query 37051 GAACCATTATGT---AACACAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACT 37106 || ||||| ||| | || | || | ||| || | | || ||| ||| | | Sbjct 1025 GAGCCATTTTGTGTAATCAGA----TACTGTTTCATACCCTCATCCCAAATACCTAAATC 970 Query 37107 TATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCT 37166 | | || | || || || || || |||||||| || || || ||||| || | | Sbjct 969 AACCAAGTCACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACG 910 Query 37167 TGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGT 37226 | || |||||| ||| |||||| | | ||||||| || |||||||| ||||| Sbjct 909 GGAGTACATATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGT 850 Query 37227 AGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATG-TGTATTAATTC 37285 |||||||||||||||||||| || | | |||||| | ||||| | || | || Sbjct 849 GGATGCAGTAGGCATTGGTGCCATGGTCAAGGAATTTCTAATACCATGCTTCATGATATC 790 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTT-TAACCACATATCATAT 37344 | || || || | | ||||||||| | | || ||||| || |||||||||| | Sbjct 789 TTTTCTTAAGGT-GTCCCAATCCCA-CATGCCGTAGGGTTTTTGGTCCCACATATCAAAC 732 Query 37345 TGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA 37404 ||||| ||||||| | || ||||| | | | || || || || |||| | | | Sbjct 731 TGTAGTATACCTTGAGAAGCAGGAGATCCTTGGAAAGTTTCGTATGGACCGTCCTTCTGA 672 Query 37405 GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 |||||||| ||| || ||| | | ||||| ||| || ||||| || ||||| |||||| Sbjct 671 GCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAAATAGTTTCAAAGATTTGGATATTT 612 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 | | ||||| || ||| |||| | | || | || || ||||| | | Sbjct 611 AGCAAACGGGCTTCCTCAGAATCAAATGGCAAACGTAACAGCATGAAAGTGTCAGCGAGA 552 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || |||||||| | | | || ||||||||| || |||| ||| | || |||| || Sbjct 551 CCTTGAACACCCAAAGCAATTGGTCTATGTCTCATATTGGATTTTCTCGCTTCTTCAACA 492 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATT 37619 || || ||||| ||| || | | | |||| ||| Sbjct 491 GGGTAGTAATTACGATCAATGACTCTGTTTAAATT 457 >seq1348 Length=1357 Score = 134 bits (148), Expect = 1e-26 Identities = 397/602 (66%), Gaps = 24/602 (4%) Strand=Plus/Plus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| || || ||||| || || |||||||||||||||| || | ||| || ||| Sbjct 437 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 496 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || ||||| |||||||||| |||| ||||| | ||| || || | ||||| ||||| Sbjct 497 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 556 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA---CCT-T 11796 || || || | || || | | ||||| || |||| |||||| ||| | | | | Sbjct 557 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCA 616 Query 11797 GTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 | || || |||||| || ||||| || || ||| | || ||| | || | Sbjct 617 GCGTCTTGA-ATCCATCTTAAAGCCCATTCGGCCTTC----TCACCGATTTCTGGGATGG 671 Query 11853 TTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || | ||| || ||||| || || | | || ||||| || Sbjct 672 TGTGAATGGCATTGAACAAGAATTCA--CTTTCTTTAGGGTCCTTGATGTAAGTATCGAT 729 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 || || || |||| || ||||||||||| || ||||| || || ||||||| Sbjct 730 CAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACT 789 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | || |||| | || || ||||| ||||| Sbjct 790 CTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 849 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTA-TATGTTTTATAAAGTATTTTTCGTCTTTAG 12089 ||| ||| || || ||||| || || | | || || || || | |||| | | | Sbjct 850 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTG-GAAATGAAAAATCTCTCGT-TCTCG 907 Query 12090 TTAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAA 12145 || || || | ||| |||| | ||| || || ||||| | ||||||| ||||||| Sbjct 908 TTCATTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAG 967 Query 12146 AAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATA 12205 ||| || | | | || || || |||||| ||||| ||||| |||||||||| | Sbjct 968 AAAGAAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGA 1027 Query 12206 AC 12207 || Sbjct 1028 AC 1029 >seq5123 Length=1068 Score = 129 bits (142), Expect = 5e-25 Identities = 281/418 (67%), Gaps = 2/418 (0%) Strand=Plus/Plus Query 38217 CATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCG 38276 |||||| | || ||| ||||| | |||||| |||| | || |||| ||| | | || Sbjct 12 CATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACG 71 Query 38277 TATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTT 38336 || ||| || | || || ||||| ||| ||| || || ||||| |||| || Sbjct 72 AATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTT 131 Query 38337 TAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGA 38396 || || || | || || || ||| ||| ||||| || | | | |||||| || Sbjct 132 CAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGA 191 Query 38397 CATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTT 38456 ||||||||| |||||| ||||| || || || || ||||| || || | || |||| Sbjct 192 CATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATATTT 251 Query 38457 TTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAG 38516 | |||| | ||||| ||||||| || | || ||||| | ||||| || ||||| Sbjct 252 TAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATATCTCTACCGTGGATGCCTAG 311 Query 38517 AGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAG 38576 | || ||||| | | ||||||||| | ||| | || | || | | |||| Sbjct 312 TGCGACTCTCATAATTAAATGTTGTGGACGTTCGGCCACTTGACCGTTGATTCTTAGTAA 371 Query 38577 ATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA-TGAATAATCTCTATCGTA 38633 ||| || ||| || ||||| | ||||||||||| || |||| ||||||| || || Sbjct 372 ATAAGAACGTTCCAAAGTTTTAAAACCAAAATAACTGTACTGAA-AATCTCTGTCATA 428 >seq3714 Length=1178 Score = 129 bits (142), Expect = 5e-25 Identities = 230/333 (69%), Gaps = 2/333 (1%) Strand=Plus/Minus Query 38302 CCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATA 38361 ||||||||| ||| || || | ||| |||| ||| || |||||| | |||||||| ||| Sbjct 1082 CCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCGATA 1023 Query 38362 CTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCG 38421 ||||||||| || | | || ||||| |||||||||||| ||| || || ||| Sbjct 1022 GAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACCAGCG 963 Query 38422 TTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCT 38481 || ||||| || || || || || |||| || || ||||| ||||||| || | Sbjct 962 TTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCAAATTATAAGTCTTC 903 Query 38482 ATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGT 38541 | ||| || ||||| | || || |||||||| | || | ||||| || ||| || Sbjct 902 AGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCATTACCAAATGCTGA 843 Query 38542 GGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATT 38601 || | |||| | || | ||| || | || | ||||| || | ||| || | | Sbjct 842 GGACGTTCTGCCACTTCACCGTTCAGTCTTAGCAAGTACGAACGCTCCAGTGTCTTGAAT 783 Query 38602 CCAAAATAACTATA-TGAATAATCTCTATCGTA 38633 || ||||| |||| || | |||| |||||||| Sbjct 782 CCGAAATACGTATACTGGA-AATCCCTATCGTA 751 >seq1795 Length=1834 Score = 102 bits (112), Expect = 8e-17 Identities = 412/632 (65%), Gaps = 33/632 (5%) Strand=Plus/Plus Query 36982 TTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT--- 37038 |||||||| || ||||| || ||||| |||| || || | | | ||| | || | Sbjct 738 TTTTGAGAGATTTCCCAGACGGTTTTGTATAGTTCCTTCAATTCTTGTGGCACATTTGGT 797 Query 37039 AAATGTTGAATAGAACCATTATGTAACACAATTG--TATTCTTT-ATGTCATTATTCCAC 37095 || ||||||||||||||| ||| |||| |||| ||| || || || ||| Sbjct 798 AAGCCTTGAATAGAACCATTTTGTGT---AATTAGATATTGTTTCATACTATCATCCCAA 854 Query 37096 ATATTTCTACTT--ATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAG 37153 ||| | | | | || || | | || | |||||| ||||| || || || |||| Sbjct 855 ATAC--CCAGGTCGACTAAATCACGTAGTAAATATGGATTAACAACTTGGAATTCACCAG 912 Query 37154 ATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTA 37213 | | || | | | || || || || |||||| | | | ||||||| || | Sbjct 913 ACAGGACACGACGAGAGTACATGTTTGAGGTCACTGGTTCGAAGCATTCATTATAACCAA 972 Query 37214 ATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAG--AAGGCTATTTCTCAATCC 37271 ||||| || || || || || ||||||||||| || || || | ||||| || || Sbjct 973 GAATTTGGGAAGTTGAGGCGGTTGGCATTGGTGCCAT-AGTCAAAGAG-TTTCTTAACCC 1030 Query 37272 ATGTGTATTAATTCTCTTTTTTA--GTTCATTCCAATCCCATAAATCTGTTGGGTT--CT 37327 |||| || ||| |||| ||| ||| | ||||||||| | | ||| || | Sbjct 1031 ATGTTTAACAATGTCCTTTCTTAAGGTT--TCCCAATCCCACATGCCAAATGGTTTAGCG 1088 Query 37328 TTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCAT 37387 || ||||||||| |||||| |||||| ||| ||||||||| | | | | || || Sbjct 1089 TT--CCACATATCGAATTGTAAAATACCCTTAGAAGCTGGAGAACCTTCAAAAGTAGAAT 1146 Query 37388 AAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTT 37447 | || | ||| || | ||| || | ||| || | |||| || || |||| Sbjct 1147 ATTTACCTTCTTTTTGGGCCAATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTT 1206 Query 37448 CGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCC-CAATAAT 37506 |||| |||||| | |||| ||| ||| |||| | || || | ||| | ||| | Sbjct 1207 CGAAGATTTGTTTGTTTAGAGTTTGAGCTACTTC-CGATTCAAAGGGTAGACGCAACATC 1265 Query 37507 ATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA- 37565 ||| | ||| ||||||||||| ||||| | | | || |||||||| ||| |||| || Sbjct 1266 ATATAAGTATCGGCCAAACCCTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAA 1325 Query 37566 --TCTAGACGATTCTATCACTGGATAATAATT 37595 ||||| | || |||||||| ||||| Sbjct 1326 TTTCTAGCC---TCGGGAACTGGATAGTAATT 1354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468489379525120