Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000756235.1_202014-09- 18] 6,048 sequences; 11,211,290 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5292 122 2e-22 seq1795 100 7e-16 >seq5292 Length=3027 Score = 122 bits (134), Expect = 2e-22 Identities = 339/515 (66%), Gaps = 34/515 (7%) Strand=Plus/Minus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-G 111477 ||| || |||||||| || |||||||| ||||| | | ||||| || ||| || | Sbjct 1160 TGTTAAGATTTGGGACGGTAATGGATCTCGTGAATATTTAGATA-AGATGGGGTTCAAAG 1102 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | | ||| ||| ||||| || || ||||| |||||||||||| | || |||||||| Sbjct 1101 ATAGGAAAGTAGGAGATCTGGGGCCCGTTTATGGATTTCAATGGAGGCATTTTGGTGCTA 1042 Query 111538 ACTACAAAACCATGC-ACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTC 111596 | ||||| || ||| | ||| ||| | ||| || | ||||||||| | | || Sbjct 1041 AATACAAGACG-TGCGATGACGACTATACTGGACAAGGTATTGATCAATTGAAACAGGTT 983 Query 111597 ATTGATCAAATTAAGAACAA-CCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCC 111655 ||| || || | |||| || ||| || | | | || ||||||||||| |||||||| Sbjct 982 ATTCATAAACTAAAGACAAATCCCTACGA-TAGAAGAATCATTATGAGTGCCTGGAACCC 924 Query 111656 AAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATG---- 111711 | || || || |||||||| | || ||||| ||| || | | ||||| |||| Sbjct 923 AGCTGATTTTGACAAAATGGCTTTGCCGCCATGCCATATTTTTTCACAGTTCTATGTCAG 864 Query 111712 --TACACGACG--------GGAT-------------GCTTTCATGCCAAATGTATCAGCG 111748 | | | | | |||| ||||||||| | |||| || || Sbjct 863 TTTCCCCAAAGAAGGAGAAGGATCCGGTAAGCCCCGCCTTTCATGCTTATTGTACCAACG 804 Query 111749 ATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTG 111808 ||| |||||| || | || || || ||||| |||||| || || | | ||| | Sbjct 803 TTCTTGTGATATGGGGTTGGGAGTACCATTTAACATTGCATCATATGCTTTGTTGACTAG 744 Query 111809 CTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTCATTCACGTTATCGGAGATGC 111868 | || ||| | || | | | || ||||| |||||||| | | || ||||| Sbjct 743 AATGATTGCTAAAGTTGTCGACATGGAGCCAGGTGAGTTCATTCATACTTTGGGGGATGC 684 Query 111869 GCATGTTTACACAAACCACATTGATGCACTTAAAA 111903 |||||||| | | ||||||||||||| ||| ||| Sbjct 683 ACATGTTTATAAAGACCACATTGATGC-CTTGAAA 650 >seq1795 Length=1834 Score = 100 bits (110), Expect = 7e-16 Identities = 398/624 (64%), Gaps = 2/624 (0%) Strand=Plus/Minus Query 364390 GTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCATCGC 364449 ||||||||| ||||| |||||| |||| || || ||| |||||| ||| | Sbjct 1366 GTTATCGACCGTAATTACTATCCAGTTCCCGAGGCTAGAAATTCAAATATGAAGCATAGA 1307 Query 364450 CCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAGATGGCATTT 364509 || |||| ||||||||| ||||| | || || || ||||||| | | | ||| Sbjct 1306 CCTATTGCTCTTGGTGTCCAGGGTTTGGCCGATACTTATATGATGTTGCGTCTACCCTTT 1247 Query 364510 GATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTATTTTGCCGCA 364569 || ||| | |||| |||||| || | ||||| ||||| || || ||| | Sbjct 1246 GAATCGGAAGTAGCTCAAACTCTAAACAAACAAATCTTCGAAACTATTTACCATGCTACT 1187 Query 364570 ATGACTGCTTCGTGTGATTTGGCA-AAAACCAAGGGAAAGTACTCTACTTATGAGGGGTC 364628 | || || ||||| ||||| |||| |||| ||| || ||||||| ||| || || Sbjct 1186 CTTGAAGCCTCCTGTGAATTGGCCCAAAAAGAAGGTAAA-TATTCTACTTTTGAAGGTTC 1128 Query 364629 CCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATGTCACGCCATCTGTCCGATG 364688 || ||| |||| | || || || ||| | ||||| | | |||| || | || Sbjct 1127 TCCAGCTTCTAAGGGTATTTTACAATTCGATATGTGGAACGCTAAACCATTTGGCATGTG 1068 Query 364689 GAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTACTCGCAACTCCCTCGTTAC 364748 | | ||||| || || | || || || ||||| | ||||| | || Sbjct 1067 GGATTGGGAAACCTTAAGAAAGGACATTGTTAAACATGGGTTAAGAAACTCTTTGACTAT 1008 Query 364749 AGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAACAACGAGTGCTTCGAACC 364808 || || ||||| || || || ||| | || || || || | || || ||||||||||| Sbjct 1007 GGCACCAATGCCAACCGCCTCAACTTCCCAAATTCTTGGTTATAATGAATGCTTCGAACC 948 Query 364809 GTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAATTTCCGGTAGTTAATAA 364868 | || || | || || || || || || || || ||||| | || |||||| Sbjct 947 AGTGACCTCAAACATGTACTCTCGTCGTGTCCTGTCTGGTGAATTCCAAGTTGTTAATCC 888 Query 364869 GTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGACAGCATGAAGAACTATAT 364928 || || | ||| | ||||| || | |||| ||| || ||||| | ||| | Sbjct 887 ATATTTACTACGTGATTTAGTCGACCTGGGTATTTGGGATGATAGTATGAAACAATATCT 828 Query 364929 CATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCAGAAGATCTGAAGCCTAT 364988 || | ||||||||| | || | | ||| | ||| |||| ||||| | Sbjct 827 AATTACACAAAATGGTTCTATTCAAGGCTTACCAAATGTGCCACAAGAATTGAAGGAACT 768 Query 364989 TTACAAAACCGTATGGGAAATTTC 365012 ||||||||||| |||||||| || Sbjct 767 ATACAAAACCGTCTGGGAAATCTC 744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303252603129536