Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000756235.1_202014-09- 18] 6,048 sequences; 11,211,290 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1348 230 3e-55 seq1795 102 9e-17 seq5123 98.7 1e-15 seq3714 96.9 4e-15 >seq1348 Length=1357 Score = 230 bits (254), Expect = 3e-55 Identities = 608/916 (66%), Gaps = 17/916 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||| ||||| ||||| || || | || || || | Sbjct 155 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 214 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||| || || |||| || || || ||| ||| || || | | | Sbjct 215 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAAGCGACCAAC 274 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 275 AGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAAA 334 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 335 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 392 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| ||| ||||||| Sbjct 393 TTTTTTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAACAAGCATGCAA 452 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||||| |||||||| || ||||| |||||||| |||| Sbjct 453 AGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAACCGGGCA 512 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| ||||| |||||||| || || ||||| || || || || || | ||||| Sbjct 513 TCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGACACCTT 572 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| |||||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 573 CAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 631 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | | ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 632 CTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACA-A 690 Query 19207 TACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | || | || ||| || || || | || | ||| ||||| || ||| |||| Sbjct 691 GA-ATTCACT-TTCTTTAGGGTCCTTGATGTAAGTATCGATCAACAAGGAGTAAGTTTCA 748 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||||||||| || || || || ||||| |||| |||| |||| || || Sbjct 749 GAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGGAATTTGG 808 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | | || |||| ||||| ||||||||||| || || ||| ||| || ||| Sbjct 809 ACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAA 868 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT----GTATTCCAATC 19439 || || | || ||| ||| | | || | | ||| || | ||||| || Sbjct 869 AAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCATTCTGTTGTTCCAGTC 927 Query 19440 ATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTT 19499 || ||||| ||||| ||||| | ||||||| | ||||| |||||||| || || || Sbjct 928 ATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCACGCTT 987 Query 19500 ATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 || | ||| || ||| | || | ||||| || | |||| ||| | || | ||| Sbjct 988 GTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTCTCCTTGTCTTC 1047 Query 19560 TTTAAGAATAGGTTCC 19575 || | | ||||||| Sbjct 1048 ATTCAACAAAGGTTCC 1063 >seq1795 Length=1834 Score = 102 bits (112), Expect = 9e-17 Identities = 787/1264 (62%), Gaps = 58/1264 (5%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||| || ||||||||||| |||||||| |||| || ||||||||||||||| Sbjct 582 GTTCTTAAGTAGTACATACCAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTA 641 Query 47073 GTTAATTTAGA-ATAACTAGGTTCT-GAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 || | ||| || | ||| || | || | || ||| | || ||| |||||| | Sbjct 642 GTAATCTTACCCATTGAT-GGTGCTTGCAAGAA-AAGATTCAAGGAATGAGACTGATCGA 699 Query 47131 T--AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 | | ||| | | |||||| ||||||| | ||| | |||| | || ||||| || Sbjct 700 TGTAGATGG--CACGATCAGCAGCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGAC 757 Query 47189 TGTTTTATAAATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--TTGAATAGATCCTCC 47245 ||||| || | || || | |||| ||| | ||| | || ||||||||| || Sbjct 758 GGTTTTGTATAGTTCCTTCAATTCTTGTGGCACATTTGGTAAGCCTTGAATAGAACCA-- 815 Query 47246 gttttctataatt-----ttgttttttaat-tcatttgaccaaagttttcgttc-agtta 47298 |||| | ||||| |||||| || | |||| ||||| | || | | | Sbjct 816 -TTTTGTGTAATTAGATATTGTTTCATACTATCATC---CCAAATACCCAGGTCGACTAA 871 Query 47299 at---gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGC 47355 || || | ||| ||| ||||||||| ||| ||||| ||||| || || | ||| Sbjct 872 ATCACGTAGT--AAATATG--GATTAACAACTTGGAATTCACCAGACAGGACACGACGAG 927 Query 47356 TATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTG 47415 || || || || |||||| | ||||||||| |||| |||||| | ||||| Sbjct 928 AGTACATGTTTGAGGTCACTGGTTCGAAGCATTCATTATAACCAAGAATTTGGGAAGTTG 987 Query 47416 ATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNN 47474 | || || ||||| | ||| | || | | | ||||||| |||| ||| || | Sbjct 988 AGGCGGTTGGCATTGGTGCCA-TAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCC 1046 Query 47475 NNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGA 47534 || ||||||||| | | |||| | | ||||| | ||| |||| Sbjct 1047 TTTCTTAAGGTTTCCCAATCCCACATGCCAAATGGTTTAGCGTTCCACATATCGAATTGT 1106 Query 47535 AGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCG 47594 | ||| || ||| |||||||| | | | || ||| ||| | | || || Sbjct 1107 AAAATACCCTTAGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCC 1166 Query 47595 AGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGA 47654 | |||||| ||||| | | | || || || ||||| || |||| | |||||||| Sbjct 1167 AATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGA 1226 Query 47655 TTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNA-ATGTATCTGCCAATCC 47713 | ||| || |||||||| || || | | ||||| ||||| || Sbjct 1227 GTTTGAGCTACTTCCGATTCAAAGGG-TAGACGCAACATCATATAAGTATCGGCCAAACC 1285 Query 47714 TTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGG 47773 || ||||||| | |||| |||||||| | |||| ||| ||| || || | ||| Sbjct 1286 CTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAATTTCTAGCCTCGGGAACTGG 1345 Query 47774 ATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCT 47833 ||| | || || |||| | | || | |||| || Sbjct 1346 ATAGTAATTACGGTCGATAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGTG 1405 Query 47834 TAATTTATTAAAATCAAA-CTTGTTATTTATAACA--------AACCT------ATTA-- 47876 |||| | | |||| | | |||| ||| || || ||||| || Sbjct 1406 TAATCTCTCGAAATTATAGCTTGCAGTTT-TACCATCTTCTGAAACCTCAACGAATGCTG 1464 Query 47877 --AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTA 47934 || || ||||| |||| |||||| || || |||| || | ||||| | | Sbjct 1465 GTAGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACGA 1524 Query 47935 TTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGT 47994 ||||| ||||| |||| ||||||||||||| || || || || || | ||| Sbjct 1525 TTTCACAACATAAATTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTGT 1584 Query 47995 TACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAG 48054 ||||||||||||| |||| ||| |||||||| || |||||| |||| | || | || | Sbjct 1585 TACATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATGG 1644 Query 48055 ATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAG 48114 | ||| | | | | | ||| ||| | | || | | || |||||| || Sbjct 1645 CATACCACA-ACTTTTGGGCTT--TAATTGTTTTACCACGACCTTCTCTTTCGTAACGAG 1701 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||||| | ||||||||||| || |||||| |||||| || || || | || Sbjct 1702 TATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGCG 1761 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 | | ||| | |||| | |||| | || || | |||| || | ||| || ||||| | Sbjct 1762 AAAACAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCATA 1821 Query 48235 GAGC 48238 |||| Sbjct 1822 GAGC 1825 >seq5123 Length=1068 Score = 98.7 bits (108), Expect = 1e-15 Identities = 475/745 (64%), Gaps = 38/745 (5%) Strand=Plus/Plus Query 48482 ACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCC 48541 ||| |||||||| || |||| || || | |||||| || | ||| || ||||| || Sbjct 90 ACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCC 149 Query 48542 TTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGT 48601 || ||| || || |||| | | |||||| |||||||| || | ||| Sbjct 150 CTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGT 209 Query 48602 TCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATA 48661 || | ||| || || |||||||| || ||| |||| |||| || | ||| ||||| Sbjct 210 ACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATA 269 Query 48662 TGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACAT 48721 ||||| | | ||| || ||||| | || || |||| | || | ||| | | Sbjct 270 CGTTTCTAAAGCAGCCTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAA 329 Query 48722 ATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGT 48781 || ||| || | ||| | | || || ||| | | | ||| || |||||| || Sbjct 330 ATGTTGTGGACGTTCGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGT 389 Query 48782 TTTAAAACCAAAATAGTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTC 48840 ||||||||||||||| |||| |||||| || | |||| | ||||| || || | | Sbjct 390 TTTAAAACCAAAATAACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATT 448 Query 48841 TTTCCTTATGTT-TAT----ATACT----ACATCCATTACATTTTTTGATA-------TA 48884 | ||||| | || || ||| | |||| ||| | | | || | || Sbjct 449 TATCCTTGTTTTCCATGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTA 507 Query 48885 -----------ATTGA-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAtttttttt 48932 ||||| | | ||||||||||| ||||| | | |||| |||| | Sbjct 508 CCAGTAGCAGCATTGACGTATCTATAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTG 567 Query 48933 GTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGA 48992 |||| |||||| | |||||| || | ||||| || |||| | || |||||||||||| Sbjct 568 GTTTGTTTATGTAAATTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATGA 627 Query 48993 ATTGTTGTACATGTACTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTAC 49051 | || || ||| || | || |||| || ||||| | |||| ||| | || || || Sbjct 628 ACAGTAGT-CATATAAGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGAC 686 Query 49052 ACCTGTATATATTCCTTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCC 49109 |||| ||| | || ||| | | | || | | || || | || ||||| | Sbjct 687 ACCTTCATAGACACCAGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTT 744 Query 49110 ATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTC 49169 ||| | ||||| ||||| | ||| | || ||||| ||||| || | | Sbjct 745 GGATCTAAACCATAGCATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGT 804 Query 49170 TCTTTACGACCGTCACGTTTTATAA 49194 |||||||||||||| | |||||||| Sbjct 805 TCTTTACGACCGTCTC-TTTTATAA 828 >seq3714 Length=1178 Score = 96.9 bits (106), Expect = 4e-15 Identities = 176/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 || ||| | ||||||||| |||| || || | |||||| ||| | ||||||||||| Sbjct 1092 AAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAAT 1033 Query 48539 TCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACA 48598 ||||| ||| ||||| |||| | || ||||| ||||||||| ||||| Sbjct 1032 ACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGATGTGG 973 Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 || || | || ||||| ||||| || || ||| | || || | || | ||| || Sbjct 972 CGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCAAATT 913 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 ||| || | | ||||| || ||||| | ||| ||||||| | |||||||||| Sbjct 912 ATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGCATTAC 853 Query 48719 CATATATTGAGGTCTTTC 48736 || || ||||| | ||| Sbjct 852 CAAATGCTGAGGACGTTC 835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562066304574720