Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766165.2_202014-10- 12] 851 sequences; 11,606,437 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq656 244 9e-60 seq231 179 3e-40 seq436 167 2e-36 seq675 111 1e-19 seq311 105 6e-18 seq625 82.4 7e-11 >seq656 Length=34094 Score = 244 bits (270), Expect = 9e-60 Identities = 417/600 (70%), Gaps = 6/600 (1%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||| || || |||| |||||||| || ||||||||||| ||||| || | || || Sbjct 10144 TTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACG 10085 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | |||||||| ||| |||||| | | ||| | ||| || || | || |||||||| Sbjct 10084 AATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATGCCA 10025 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || ||||||| ||||||||| || ||||| ||||| || ||||| || || ||||| Sbjct 10024 TGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACG 9965 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||| ||| | || | | ||| || | | |||||| || | ||| | || Sbjct 9964 GGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACC 9905 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||||| ||| |||| ||| || | || | ||| || || || | | Sbjct 9904 AGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGT 9845 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 ||| || |||| || |||| |||| |||||||| || |||||||| |||||| || Sbjct 9844 TTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTT 9785 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || ||||||||||| || |||||||| | ||| || ||| |||| ||||| || Sbjct 9784 CATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGT 9725 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || |||||| ||||| ||| ||||| | || ||||| || | || || || Sbjct 9724 TGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTC 9665 Query 23821 AATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 || | |||| ||||| || || | ||||| | ||| || | | ||| || | ||| Sbjct 9664 GATAT-CTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTCGG 9606 Query 23880 C--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATA 23937 | | ||| ||||| ||| | | | ||| ||||||| || |||||||| |||||||| Sbjct 9605 CCACTTGA--CCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 9548 >seq231 Length=24542 Score = 179 bits (198), Expect = 3e-40 Identities = 426/641 (66%), Gaps = 2/641 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || ||| ||| |||| |||||||| || ||||||||||| ||||| || | || || Sbjct 6216 TTGAACACGTTTCATGAAAAGATCAGGGATCCATAGAGCAGGGAACAAATCTCTTGCACG 6157 Query 23401 CACCTCCTCTTTGCC-GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | || || || || ||||| ||| | | ||| | |||||| || | || ||||||| Sbjct 6156 AATTTCTTCCTTACCATGTGTT-TTTCTGATATCGACAAAGTCGAAGATATCTGCATGCC 6098 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAAC 23519 | ||||| | | ||| ||| || || || |||||||| || || ||||| || || |||| Sbjct 6097 ATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTCTTGTTACCACCCTGGTCCACATAAC 6038 Query 23520 GGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC 23579 |||| || || ||| | || | | ||| || | | ||||| || | ||| | Sbjct 6037 GGGCAGTATTATTGAAAACACGAATCATAGGAATCAACCCGTTTGAAGTACCGTTGGTAC 5978 Query 23580 CCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCG 23639 | || | | |||||| | | || | ||||| | || | ||| | || || | | Sbjct 5977 CAGCGATATAAGAACCTGTGGAACGGATGTTGTTGATATGAAGACCAACACCACCTGCAG 5918 Query 23640 ATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTT 23699 ||| || ||||| || |||| ||||| ||| || || || || ||||| ||| || | Sbjct 5917 TTTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCGATAGAGTCATCCT 5858 Query 23700 TGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTG 23759 | | || | |||||||| ||||||||||| | | |||||| | || ||| | | Sbjct 5857 TCATGGCAATTAAGAAACATGAAGACATTTGAGGATGTGGCGTACCAGCGTTGAATAAAG 5798 Query 23760 TCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCAT 23819 | ||| ||||| || ||||||| |||||| | ||| || || | | | | | Sbjct 5797 TTGGGGAAGCGTGAGTGAAGTATCTTAACGACATCAAATTATAAGTCTTCAGCACAGATT 5738 Query 23820 CAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGA 23879 | || || || || ||||| | || || ||||| | || | ||||| | || Sbjct 5737 CGATATCGCTACCATGGATACCTAGCGCCACACGCATTACCAAATGCTGAGGACGTTCTG 5678 Query 23880 CCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGT 23939 || | ||||| | | | | || || ||||| | || || || ||||| ||||| Sbjct 5677 CCACTTCACCGTTCAGTCTTAGCAAGTACGAACGCTCCAGTGTCTTGAATCCGAAATACG 5618 Query 23940 CATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAA 23980 ||| | || || | ||||| ||| |||||||| |||||| Sbjct 5617 TATACTGGAAATCCCTATCGTACACGATGGCCGAGTTCAAA 5577 >seq436 Length=15573 Score = 167 bits (184), Expect = 2e-36 Identities = 538/822 (65%), Gaps = 21/822 (3%) Strand=Plus/Minus Query 57591 GCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG 57650 || ||||| || || ||||||| |||||| | || ||||||||||| | || ||| Sbjct 814 GCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATCCATGACTGG 755 Query 57651 GATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 | | | || || |||||| ||| ||| || | || ||||||||| Sbjct 754 AACAACAGAATGAACGAGAACGAGAGATTTTTCATTTCCAGAGTTCTTGCCTTTTTCGCC 695 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || || ||||||||||| || || ||||| |||| || || ||||| ||| | Sbjct 694 GCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTCCAAATT 635 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | | || ||||| || ||| | |||||||| | || || |||| Sbjct 634 CCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCACTCTGAAACT 575 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAA 57886 || || | | |||||||| ||| | |||||| | || || | | | ||||||| Sbjct 574 TACTCCTTGTTGATCGATACTTACATCAAGGACCCTAAAGA-AAGTGAATTCTTGTTCAA 516 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946 || || | || || || | |||| ||||||| || ||| | | | |||||| | Sbjct 515 TGCCATTCACACCATCCCAGAAATCGGTGAGAAGGCCGAATGGGCTTTAAGATGGATTCA 456 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 | ||| ||| ||| | || || ||| | || || ||| || | |||||| | || Sbjct 455 AGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGCCTCCATTGAAGGTGTCTT 396 Query 58007 CTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || || |||||| | || || ||| |||| || | || |||||||||| | Sbjct 395 TTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAGAGGTATGATGCCCGGTTT 336 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 || ||| |||||| ||||| | | ||||| ||| | || || || ||||| ||| | Sbjct 335 AACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCACACCGACTTTGCATGCTT 276 Query 58127 AATGTACTCTCACATTGTCAATAAACC-GACGC-GGGATCGCATCTTG--GACATTATCA 58182 ||| | | || | || ||||| ||| | | |||| ||| | ||| ||| Sbjct 275 GTTGTTCGCCCATTTGAAGAACAAACCAGACCCAGCCATCG----TTGAAAAAATTGTCA 220 Query 58183 CCGAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTC 58241 ||||||| || | || ||| || || | || || ||| |||| || || |||| Sbjct 219 CCGAGGCTGTGGAAATTGAACAAAGA-TACTTCTTGGACGCCTTACCAGTTGCTTTGCTA 161 Query 58242 GGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTC 58301 ||||||||| ||| || ||| | ||| ||||||| || ||||||||||| ||| || Sbjct 160 GGTATGAACGCTGACTTAATGAACCAATACGTTGAGTTCGTCGCCGACAGACTGTTGGTC 101 Query 58302 GAACTGATTGGAGAGCGTCATTACAACACG---AAAAATCCGTTTGATTTTATGAATCTG 58358 | || | || | | ||| ||| | |||| || || ||||| ||| | Sbjct 100 G--CT-TTCGGTAACAAGAAATACTACAAGGTCGAAAACCCCTTCGATTTCATGGAAAAC 44 Query 58359 ATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTT 58400 ||||| | | || ||||| ||||| |||||||| | |||| Sbjct 43 ATCTCCTTGGCCGGTAAGACTAACTTCTTCGAAAAGAGAGTT 2 >seq675 Length=29033 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| ||||| || || || ||| | || |||||| | ||| Sbjct 16929 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 16870 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | ||| ||||||||||| | || || || || Sbjct 16869 GACACTATTGACAACGTCAAAAGTAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 16810 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || || || || |||||||| || || || ||||||||| Sbjct 16809 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 16750 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||||| || || | ||| |||| | ||| |||| || |||| Sbjct 16749 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTA 16701 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| |||||||| || || || ||| | || |||||| | || Sbjct 16473 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 16414 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || ||| ||||||||||| | || || |||||| Sbjct 16413 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 16354 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || || || || | ||||| || || || || || || Sbjct 16353 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 16294 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| || || |||||||| || || | || ||||||| |||| Sbjct 16293 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTTGAGGTTGAGGGGTGGTA 16245 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||||| ||||| || || || ||| | || |||||| | ||| Sbjct 16701 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 16642 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || || || ||||| | || || || || Sbjct 16641 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 16582 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || | ||||| || || || || || ||| Sbjct 16581 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 16522 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| ||||| |||||||| |||| | ||| |||| || |||| Sbjct 16521 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGTA 16473 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||| |||| || ||||| || || | || |||||| | ||| Sbjct 17157 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 17098 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || ||| ||||||||||| | || || || || Sbjct 17097 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 17038 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || || || || || ||| | |||||| || || || ||||| ||| Sbjct 17037 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 16978 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || | ||||| || || || || || || |||| Sbjct 16977 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTA 16929 >seq311 Length=22525 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 14091 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 14032 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || ||| Sbjct 14031 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 13972 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || |||||||| || ||| || ||| || Sbjct 13971 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 13912 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||||| || |||| | ||| |||| || ||| Sbjct 13911 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGT 13861 >seq625 Length=54197 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| |||||| |||| || || || ||||| | || |||||| | || |||| | Sbjct 37050 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 36991 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||||| | || || ||||| || | | Sbjct 36990 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 36931 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || || ||||| || || ||||||||| || ||| | || || ||||| ||||| Sbjct 36930 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 36871 Query 31382 GAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| ||| | ||| |||| | ||| | || || |||| Sbjct 36870 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGTA 36831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445761658159920