Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766175.2_202014-10- 12] 607 sequences; 11,646,928 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq25 118 9e-22 seq392 104 2e-17 >seq25 Length=22969 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| |||| || || || || || || |||||| ||| ||| | Sbjct 14177 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 14118 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | || ||||| || || || || |||||| | || || Sbjct 14117 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 14058 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | |||||||| || || |||||||||||| | |||| || |||| ||| Sbjct 14057 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 13998 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||||||||| ||| |||| || |||| |||| || Sbjct 13997 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 13948 >seq392 Length=40014 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || || || || || ||| || ||| | | Sbjct 27736 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 27795 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | |||| |||||| |||||||||||| | || |||||| Sbjct 27796 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 27855 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | || ||||| || || ||| | |||||| | ||| || | || ||||| Sbjct 27856 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 27915 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||||||||||||| ||||||| |||| |||| || Sbjct 27916 ATCCAAAAGGAATCTACTCTTCACCTGGTGTTGAGATTGAGAGGTGG 27962 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| |||| ||| |||| || || || || ||| || ||| | | Sbjct 27964 ATGCAAATTTTCGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 28023 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | ||| ||||||| || || |||||| | || ||| || Sbjct 28024 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 28083 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | |||||||| || |||||| | |||||| | ||| || | || |||||| Sbjct 28084 CAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 28143 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||||||||||| || ||||||||| | || || Sbjct 28144 ATTCAAAAGGAGTCCACTCTTCACCTCGTCTT 28175 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || || |||||| | || ||||||||||||| | |||||||| || ||| Sbjct 27592 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAA 27651 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| ||||||| | ||| || | ||||| || ||||| || || ||||| | || Sbjct 27652 CAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTACGTTGCAT 27711 Query 25239 ATGGTGTTACGATTACGAGGAGG 25261 ||||||| |||| |||| || Sbjct 27712 TTGGTGTTGAGATTGAGAGGTGG 27734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410793761002298