Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766175.2_202014-10- 12] 607 sequences; 11,646,928 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq541 174 1e-38 >seq541 Length=38674 Score = 174 bits (192), Expect = 1e-38 Identities = 550/839 (66%), Gaps = 39/839 (5%) Strand=Plus/Plus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || || |||||| ||||| || ||||| || || || | || || || ||| Sbjct 18 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 77 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| |||||||| || |||| ||| | |||||||| || || || | | || Sbjct 78 TCCATGAAATCGAAGGGGTTTT-CGACCTTGTAGTATTTCTTGTTACCGAAAGCGACCAA 136 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 || |||||| || || ||||| | ||| || |||||||| ||| |||||| |||| || Sbjct 137 CAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAA 196 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGt---ttttttCTATATCAACTGCTTCGATAAC 13095 || || | || || || |||| ||| ||| || || || || ||| | || Sbjct 197 AGCAACTGGTAAGGCGTCC---AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGAC 253 Query 13096 TATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----AGATGCTTAAACATCATAC 13151 || | | | | || | || || |||| | | ||| |||| || | Sbjct 254 AATTTTT-TCA--ACAATGGCTGGGTCTGG-TTTGTTCTTCAAATGGGCGAACAACAAGC 309 Query 13152 ATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGAC 13211 ||||||| || |||||| ||||| ||||||| || | ||||| ||||| |||| || Sbjct 310 ATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAAC 369 Query 13212 CCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTA 13271 | ||||| | |||| ||||| | ||| || || | ||||| ||||| || ||||| | Sbjct 370 CGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGA 429 Query 13272 TTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT- 13330 ||||||| | ||||| || | | ||||||||| || | | ||| Sbjct 430 CACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACA-AGGCGTCAGCGTCTTGG 488 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC----ATATTTTCTATTGC 13386 ||||| || ||||| | || || | || | ||| || | | || || Sbjct 489 ATCCATCTTAAAGCCCATTCGGCCTTCTC----ACCGATTTCTGGGATGGTGTGAATGGC 544 Query 13387 GTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATA 13446 || || || | | |||| ||| ||| || |||||||| ||||| ||| || Sbjct 545 ATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATCAACAAGGAGTA 604 Query 13447 CATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGA 13506 |||| || ||||||||||| ||| ||||||||||| || |||| | ||||||| Sbjct 605 AGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCCTCTGG 664 Query 13507 TACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGC 13566 | || ||||||| | | || |||| | |||||||| ||||| || |||||| ||| Sbjct 665 AATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGC 724 Query 13567 AGCaaaaaaaGCAAG---TATGTGCTTAATAAAt---tttttttCGTT--TTCTGACAAC 13618 || ||||| ||||| | || | | |||| | || ||||| ||||| Sbjct 725 GGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTCATTCTG----- 779 Query 13619 TTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGC 13677 || ||| || | | ||| || || ||||| | || ||| ||||||| |||||||| Sbjct 780 TTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGC 838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979211673014