Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766175.2_202014-10-
12] 607 sequences; 11,646,928 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq392 167 5e-36
seq541 152 1e-31
seq471 138 3e-27
seq25 125 2e-23
seq572 86.0 1e-11
>seq392
Length=40014
Score = 167 bits (184), Expect = 5e-36
Identities = 177/231 (77%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | || || || | |||||||| || || || || ||||||
Sbjct 27965 ATACCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 27906
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | |||||||| ||||||||||| || ||||||||||| | ||||||||||| |||
Sbjct 27905 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 27846
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508
|| || ||||||||||| ||||| ||| ||||| || || || | || ||| || |||
Sbjct 27845 GGGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTC 27787
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||||||| || |||||||| || || || ||||| || || || |||||
Sbjct 27786 AACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 27736
Score = 163 bits (180), Expect = 7e-35
Identities = 174/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||||||| || || |||||||| || || || |||||||| || || |||
Sbjct 27280 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 27221
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || ||||||||||||||||| || || || ||||| || | || |||||||| |||
Sbjct 27220 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 27161
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || ||||| || | || || || || | ||||||| || |||
Sbjct 27160 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 27101
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|| || | ||| || || ||||| || | || || || || ||||||||
Sbjct 27100 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 27051
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || || |||||||| ||||| || || |||||||| |||||||||||||| ||
Sbjct 28160 GTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCG 28101
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
||||| || | || || || || ||||| || ||||| || || ||||| |||| ||
Sbjct 28100 GCAAAGATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGACTTA 28041
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | || || || ||| |||||||| || ||||||||||| || |||||
Sbjct 28040 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 27981
Query 104543 TTTACAAATATCTGCAT 104559
|| || || || |||||
Sbjct 27980 TTGACGAAAATTTGCAT 27964
Score = 132 bits (146), Expect = 1e-25
Identities = 147/196 (75%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 104364 TAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAG 104423
||||||| || || || || |||||||| | ||||||||||||||||| || || || |
Sbjct 27474 TAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGG 27415
Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483
|||| || | |||||||||||| ||||| || ||||| || ||||| || || | || |
Sbjct 27414 CAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAA 27355
Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543
| || || | || ||| | ||| ||||||| || || || ||||| || | || |
Sbjct 27354 CGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCT 27295
Query 104544 TTACAAATATCTGCAT 104559
| ||||| ||||||||
Sbjct 27294 TAACAAAGATCTGCAT 27279
Score = 120 bits (132), Expect = 7e-22
Identities = 114/146 (78%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | || | ||| || ||||| ||||||||||| ||||| |||
Sbjct 27737 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 27678
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || |||||||||||||| |||||||| || ||||| || | || |||||||| |||
Sbjct 27677 GACAGCGTTCTACCGTCTTCCAGTTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 27618
Query 104450 GGTATTCCTTCTTTATCCTGAATCTT 104475
|| || ||||| || || ||||| ||
Sbjct 27617 GGAATACCTTCCTTGTCTTGAATTTT 27592
>seq541
Length=38674
Score = 152 bits (168), Expect = 1e-31
Identities = 377/564 (67%), Gaps = 26/564 (5%)
Strand=Plus/Minus
Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804
||||| | |||| |||||||| ||||| | |||||| | ||| ||||| | || |
Sbjct 853 TACAAGCGTGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATC 794
Query 268805 ATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCG 268861
|| ||||| || || ||| |||| || ||| || || || |||||||
Sbjct 793 CATGACTGGAACAACAGAATGAACGAGAACGAGAGATTTTTCATTTCCAGAGTTCTTGCC 734
Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921
||||| || | | ||| ||||| ||||| ||||| | || || || |||| ||
Sbjct 733 TTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAA 674
Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981
|| || ||||| || || | |||| ||||| ||||| || || |||||||||||
Sbjct 673 GTCCAAATTCCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCAC 614
Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040
|| || | ||| | || || |||||||| || | || | ||||||| |
Sbjct 613 TCTGAAACTTACTCCTTGTTGATCGATACTTACATCAAGGAC-----CCTAAAGAAAGTG 559
Query 269041 ACTATTTTCTTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATG 269091
| | | || ||| ||| | || || | | | ||||||| | |||||
Sbjct 558 AAT-TCTTGTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAATG 504
Query 269092 GGCTCTGAAATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGC 269148
|||| | | |||||| | || | |||||| || ||||| ||||||| |||||
Sbjct 503 GGCTTTAAGATGGATCCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGC 444
Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208
| | | |||||| | || || || || || |||||| | || || |||||||| || ||
Sbjct 443 CTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAG 384
Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268
||| | ||||| || ||||| || || ||||||||||| | || ||||||||||| ||
Sbjct 383 AGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCA 324
Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292
| |||||| || || || || ||
Sbjct 323 CACCGACTTTGCATGCTTGTTGTT 300
>seq471
Length=78804
Score = 138 bits (152), Expect = 3e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| || | || | |||||| || ||||| || || || || ||||||
Sbjct 17297 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 17238
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||||||||||||||||||| | ||| || |||||||| || | || ||||| |||||
Sbjct 17237 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 17178
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || ||||| || || || ||||| | || ||||| || | ||| || || |||
Sbjct 17177 GGNATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCA 17118
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535
|| || | || || |||||||||||
Sbjct 17117 ACTTCCAAAGTGATGGTCTTACCAGT 17092
>seq25
Length=22969
Score = 125 bits (138), Expect = 2e-23
Identities = 152/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416
|||| |||||||| || || || || ||||| || | ||||||||| ||||| | |||
Sbjct 13972 TGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGC 14031
Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476
|| |||||||| || | || ||||| ||||| || || ||||| || || || |||||
Sbjct 14032 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 14091
Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536
| || ||||| || | || || || ||| || || || |||||||||||||| ||
Sbjct 14092 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTT 14151
Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563
| || || || || || ||||| |||
Sbjct 14152 AAAGTCTTGACGAAAATTTGCATCTTG 14178
>seq572
Length=77059
Score = 86.0 bits (94), Expect = 1e-11
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| | || | |||| || || || |||||||| ||||| || ||||||
Sbjct 36155 ATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA 36214
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| | |||||||||||||| | ||| || |||||||| || | || ||||| |||||
Sbjct 36215 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 36274
Query 104450 GG 104451
||
Sbjct 36275 GG 36276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151389445358756
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