Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766185.2_202014-10- 12] 554 sequences; 11,624,690 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq480 149 1e-30 seq503 145 1e-29 seq224 145 1e-29 seq67 143 5e-29 seq213 116 7e-21 >seq480 Length=101735 Score = 149 bits (164), Expect = 1e-30 Identities = 167/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || || ||||||||||| | || || || || || Sbjct 40116 ATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 40057 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || |||| || || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 40056 TCAGATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 39997 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| || || || || ||| Sbjct 39996 GGTGGNATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGAT 39937 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060 || ||||| | ||| ||||| |||||||| || || |||| ||| Sbjct 39936 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 39893 >seq503 Length=86634 Score = 145 bits (160), Expect = 1e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || ||||||||||| | || || ||||| || ||||| | ||||| ||| || || Sbjct 50633 ATGATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAG 50574 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || || || | || |||| |||||||| ||||||||||| || ||||| ||||||||| Sbjct 50573 TCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 50514 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || ||||| || ||||| || || || ||||| ||||| || || ||| Sbjct 50513 GGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGAT 50454 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054 || ||||| | ||| ||||| |||||||| || || || Sbjct 50453 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTT 50416 >seq224 Length=44098 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| |||| || || || || | ||||| || || || || || || Sbjct 27709 ATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 27650 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || | || || | ||| |||||||||||||| ||||||||||| || || Sbjct 27649 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 27590 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| |||| || || ||||| || || ||||| Sbjct 27589 GGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 27530 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || || || || || |||| ||||| ||||| || ||||| Sbjct 27529 ACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGATGAAAATTTGCAT 27480 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | || || || ||||| || |||| |||||| ||| |||||||| Sbjct 27481 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 27422 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| |||| ||| ||||| ||||| || ||||| ||||| || || Sbjct 27421 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 27362 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| || || ||| || || || || ||||| Sbjct 27361 GGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCA 27302 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||| ||| ||||||||||| || || || |||| || |||||||| Sbjct 27301 ACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 27252 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || | || || | |||||| || | ||| || ||| || ||||| Sbjct 27253 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 27194 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || |||| || | || ||||| ||||| || ||||| ||||| || || Sbjct 27193 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 27134 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| || || || || ||||| || ||||| Sbjct 27133 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 27074 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||||||||| || || || || | ||| |||||||| Sbjct 27073 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 27024 >seq67 Length=22807 Score = 143 bits (158), Expect = 5e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || || |||| ||||| || || || || Sbjct 13766 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTG 13825 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 || || || |||| || | || |||||||| ||||||||||| || ||||| |||||| Sbjct 13826 TAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 13885 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 |||||||| || ||||| || ||||| || || || ||||| ||||| || || Sbjct 13886 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAA 13945 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || ||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 13946 GATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 14004 >seq213 Length=38486 Score = 116 bits (128), Expect = 7e-21 Identities = 334/505 (66%), Gaps = 13/505 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 |||||||| ||||||||| | |||||||| ||||| || || || | || || || Sbjct 35 TTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCGGCCAAGGAGATGTTT 94 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATAT-AA 38950 | ||| ||||| || || |||| | || || ||||| | | || | | | | || Sbjct 95 TCCATGAAATCGAAGGGGTTTTCGACCTTGTAGTATTTCT-TGTTACCGAAAGCGACCAA 153 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 | ||| ||||| || || ||||| ||||| |||||| ||| |||||||| | || Sbjct 154 CAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTCAGCGTTCATACCTAGCAA 213 Query 39011 TTTAAATGGTAATGCATCATCAATAAAT-TCttt-ttctatttctacagcttgtttaatt 39068 || |||||| || || ||| || | ||||| ||| ||||| ||||| | | | Sbjct 214 AGCAACTGGTAAGGCGTC--CAAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACA 271 Query 39069 atcataattatattattttttgataa--tttatatttaatatgattcgcatataGTAAAC 39126 || | || | || | | | ||| | || | ||| || | | || | Sbjct 272 ATTTT--TTCAACGATGGCTGGGTCTGGTTTGTTCTTCAAATGG---GCGAACAACAAGC 326 Query 39127 ATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATC 39186 ||||||| || || || ||||||||||| ||| | || ||||| || ||| ||||| | Sbjct 327 ATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTTAAAC 386 Query 39187 CTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 | ||||| | ||||||||||| | ||| || || || ||||| || || || || | Sbjct 387 CGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAAAAGA 446 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 ||| || | | ||||| || | || |||| | ||||||| | | | ||| || Sbjct 447 CACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCTTGAA 506 Query 39307 TCCAATTTATGGCCCAATCTGCTTT 39331 |||| ||| ||||| || || || Sbjct 507 TCCATCTTAAAGCCCATTCGGCCTT 531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905129731933200