Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766195.2_202014-10- 12] 670 sequences; 11,556,258 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq268 107 2e-18 >seq268 Length=40227 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | ||||||||||||||||| | ||||| || ||||| |||||||| || Sbjct 12717 TACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 12776 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | || || ||||| || || || |||| | | ||| ||||| |||| Sbjct 12777 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGAG 12836 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| ||||| ||||| | |||| ||||| | | || | Sbjct 12837 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 12896 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| ||||||| ||| || ||||| |||||||| Sbjct 12897 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 12945 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | ||||||||||||| ||| | ||||| || ||||| |||||||| || Sbjct 12261 TACCACCTCTCAATCTCAACACCARGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 12320 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | ||| || || || || ||||| | || | | ||| ||||| |||| Sbjct 12321 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 12380 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || || ||| |||||| ||| || | || | ||||| | || | Sbjct 12381 GGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 12440 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || || || |||||||| || ||||| ||||| Sbjct 12441 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 12489 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | |||||||||||||| || | ||||||||||| |||||||| ||||| Sbjct 12489 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 12548 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || | || || || ||||| || || |||| | | || ||||| |||| Sbjct 12549 ACAGCGTTCTACCGTCTTCCAGTTGTTTACCGGCAAAGATCAATCTTTGTTGATCTGGAG 12608 Query 118630 GTATGCCCTCCTTGTCTGTAATTTT 118654 | || || ||||||||| |||||| Sbjct 12609 GAATACCTTCCTTGTCTTGAATTTT 12633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433826857503640