Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766195.2_202014-10- 12] 670 sequences; 11,556,258 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq484 219 5e-52 seq612 205 1e-47 seq351 165 9e-36 >seq484 Length=24587 Score = 219 bits (242), Expect = 5e-52 Identities = 1114/1763 (63%), Gaps = 60/1763 (3%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||| || ||||||||||| |||||||| |||| || ||||||||||||||| Sbjct 17119 GTTCTTAAGTAGTACATACCAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTA 17178 Query 47073 GTTAATTTAGA-ATAACTAGGTTCT-GAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 || | ||| || | ||| || | || | || ||| | || ||| |||||| | Sbjct 17179 GTAATCTTACCCATTGAT-GGTGCTTGCAAGAA-AAGATTCAAGGAATGAGACTGATCGA 17236 Query 47131 T--AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 | | ||| | | |||||| ||||||| | ||| | |||| | || ||||| || Sbjct 17237 TGTAGATGG--CACGATCAGCAGCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGAC 17294 Query 47189 TGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--TTGAATAGATCCTC 47244 ||||| || |||| || ||| |||| ||| | ||| | || ||||||||| || Sbjct 17295 GGTTTTGTATAATTCCTTCAAT-TCTTGTGGCACATTTGGTAAGCCTTGAATAGAACCA- 17352 Query 47245 Cgttttctataatt-----ttgttttttaat-tcatttgaccaaagttttcgttc-agtt 47297 |||| | ||||| |||||| || | |||| ||||| | || | | Sbjct 17353 --TTTTGTGTAATTAGATATTGTTTCATACTATCATC---CCAAATACCCAGGTCGACTA 17407 Query 47298 aat---gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGG 47354 ||| || | ||| ||| ||||||||| ||| ||||| ||||| || || | ||| Sbjct 17408 AATCACGTAGT--AAATATG--GATTAACAACTTGGAATTCACCAGACAGGACACGACGA 17463 Query 47355 CTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTT 47414 || || || || |||||| | | ||||||||| |||| |||||| | |||| Sbjct 17464 GAGTACATGTTTGAAGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTT 17523 Query 47415 GATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTN 47473 || || || ||||| | ||| | || | | | ||||||| |||| ||| || | Sbjct 17524 GAGGCGGTTGGCATTGGTGCCA-TAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTC 17582 Query 47474 NNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTG 47533 || ||||||||| | | |||| | | ||||| | ||| |||| Sbjct 17583 CTTTCTTAAGGTTTCCCAATCCCACATGCCAAATGGTTTAGCGTTCCACATATCGAATTG 17642 Query 47534 AAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGC 47593 | ||| || || |||||||| | | | || ||| ||| | | || || Sbjct 17643 TAAAATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGC 17702 Query 47594 GAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | |||||| ||||| | | | || || || ||||| || |||| | ||||||| Sbjct 17703 CAATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAG 17762 Query 47654 ATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNA-ATGTATCTGCCAATC 47712 | | |||||| |||||||| || || | | ||||| ||||| | Sbjct 17763 AGTTTGAGCTTCTTCCGATTCAAAGGG-TAGACGCAACATCATATAAGTATCGGCCAAAC 17821 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 | || ||||||| | |||| |||||||| | |||| ||| ||| || || | || Sbjct 17822 CCTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAATTTCTAGCCTCGGGAACTG 17881 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | || || |||| | | || | |||| || Sbjct 17882 GATAGTAATTACGGTCGATAACTCTGTTCAAGTTGTGGGTAATGACTTTAGCAATCTCGT 17941 Query 47833 TTAATTTATTAAAATCAAA-CTTGTTATTTATAACA--------AACCT------ATTA- 47876 |||| | | |||| | | |||| ||| || || ||||| || Sbjct 17942 GTAATCTCTCGAAATTATAGCTTGCAGTTT-TACCATCTTCTGAAACCTCAACGAATGCC 18000 Query 47877 ---AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933 || || ||||| |||| |||||| || || |||| || | ||||| | Sbjct 18001 GGTAGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACG 18060 Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||||| ||||| ||| ||||||||||||| || || || || || | || Sbjct 18061 ATTTCACAACATAAGTTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTG 18120 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||||||||||||| |||| ||| |||||||| || |||||| |||| | || | || Sbjct 18121 TTACATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATG 18180 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | | | | ||||| | | | || | | || |||||| | Sbjct 18181 GCATACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGA 18237 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||||| | ||||||||||| || |||||| |||||| || || || | || Sbjct 18238 GTATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGC 18297 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 | | || | |||| | |||| | || || | |||| || | || || ||||| Sbjct 18298 GAAAATAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGGTCAGGGATCCAT 18357 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 ||||| || ||||| || | | | |||||| || ||| | || | | || Sbjct 18358 AGAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCG 18417 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | |||||| | ||||| ||||||||||| || || | | || | |||| |||| Sbjct 18418 ACAAAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTC 18477 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| || || || | ||| | ||||||||| || |||| | | ||| || | Sbjct 18478 TTGTTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATC 18537 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 | || ||||| |||| ||||| || | |||||| || | | | || || | Sbjct 18538 AACCCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTG 18597 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| | ||||||||| |||| || || | |||||| ||| | |||||| Sbjct 18598 ATATGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCA 18657 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||| ||||| ||| ||||| |||| | || ||||| ||||||||| ||| Sbjct 18658 TAAATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGA 18717 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || || || | || ||||| ||||| || || ||| | || || | || | | Sbjct 18718 TGTGGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATC 18777 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGC 48713 || ||||| || | | ||||| || ||||| | ||| ||||||| | |||||| Sbjct 18778 AAATTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGC 18837 Query 48714 ATTAACATATATTGAGGTCTTTC 48736 |||| || || ||||| | ||| Sbjct 18838 ATTACCAAATGCTGAGGACGTTC 18860 >seq612 Length=38638 Score = 205 bits (226), Expect = 1e-47 Identities = 430/632 (68%), Gaps = 13/632 (2%) Strand=Plus/Plus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| ||| |||||||| || || | || |||||||||| |||||||| || ||| Sbjct 228 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 287 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||||||| ||||||| ||||| ||||| |||||||| || || ||||| || || Sbjct 288 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 347 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATC 19130 || || || | |||||| | | ||||| |||||||||||||| ||| ||| | || || Sbjct 348 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTC 406 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | | || |||||| | | ||||| || ||||||| | ||| || || | Sbjct 407 AGCGTCTTGGATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTG 466 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAA 19247 || | ||| || | | | || | || ||| || || || | || | ||| ||||| Sbjct 467 AATGGCATTGAACA-AGA-ATTCACT-TTCTTTAGGGTCCTTGATGTAAGTATCGATCAA 523 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 || ||| |||| || ||||||||||| || || || || ||||| |||| | Sbjct 524 CAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTT 583 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 ||| |||| || || ||||| | | || |||| ||||| ||||||||||| || || Sbjct 584 TGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACC 643 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 ||| ||| || ||||| || | || ||| ||| | | || | | ||| | Sbjct 644 GTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCA 702 Query 19428 T----GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483 | | ||||| |||| ||||| ||||| ||||| | ||||||| | ||||| |||| Sbjct 703 TTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAG 762 Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAA 19543 |||| || || || || | ||| || ||| | || | ||||| || | |||| Sbjct 763 AAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAG 822 Query 19544 ATCTATTTTTATTTTCTTTAAGAATAGGTTCC 19575 ||| | || | ||| || | | ||||||| Sbjct 823 TTCTCTCCTTGTCTTCATTCAACAAAGGTTCC 854 >seq351 Length=33461 Score = 165 bits (182), Expect = 9e-36 Identities = 807/1270 (64%), Gaps = 43/1270 (3%) Strand=Plus/Plus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 23661 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 23720 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 23721 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 23779 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 23780 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 23837 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 23838 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 23896 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 23897 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 23956 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | ||||||||||| Sbjct 23957 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAAGATATCAGCATG 24016 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 24017 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 24076 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | |||||| || || |||| | | ||| || | | ||| || || |||| || || Sbjct 24077 ACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 24136 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 24137 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 24196 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 24197 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 24256 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 24257 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 24316 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 24317 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 24376 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 24377 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 24436 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 24437 GGCGACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 24496 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TA 48854 |||| |||||| || | |||| | ||||| || || | | | ||||| | || | Sbjct 24497 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCA 24555 Query 48855 T----ATACT----ACATCCATTACATTTTTTGATA-------TA-----------ATTG 48888 | ||| | |||| ||| | | | || | || |||| Sbjct 24556 TGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTG 24614 Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947 | | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | | Sbjct 24615 ACGTATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAA 24674 Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007 ||||| || | ||||| || |||| | || ||||||||||||| || || ||| || Sbjct 24675 TTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CATATA 24733 Query 49008 CTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCC 49066 | || |||| || ||||| | |||| ||| | || || |||||| ||| | || Sbjct 24734 AGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGACACC 24793 Query 49067 TTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAA 49124 ||| | | | || | | || || | || ||||| | ||| | ||||| Sbjct 24794 AGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCATAG 24851 Query 49125 CATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCA 49184 ||||| | ||| | || ||||| ||||| || | | |||||||||||||| Sbjct 24852 CATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCGTCT 24911 Query 49185 CGTTTTATAA 49194 | |||||||| Sbjct 24912 C-TTTTATAA 24920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562104092338800