Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766245.2_202014-10- 12] 413 sequences; 11,644,991 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq182 163 7e-35 seq161 143 6e-29 seq16 125 2e-23 seq219 87.8 4e-12 >seq182 Length=49204 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||||||| || || |||||||| || || || |||||||| || || ||| Sbjct 32257 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 32198 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || ||||||||||||||||| || || || ||||| || | || |||||||| ||| Sbjct 32197 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 32138 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | || || || || | ||||||| || ||| Sbjct 32137 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 32078 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || || ||||| || | || || || || |||||||| Sbjct 32077 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 32028 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| ||||| || || |||||||| ||||||||||| || || Sbjct 33023 GTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCG 32964 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || || || || ||||| || ||||| || || ||||| || | || Sbjct 32963 GCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 32904 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| |||||||| || ||||||||||| || ||||| Sbjct 32903 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 32844 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 32843 TTGACAAAAATTTGCAT 32827 Score = 132 bits (146), Expect = 1e-25 Identities = 147/196 (75%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 104364 TAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAG 104423 ||||||| || || || || |||||||| | ||||||||||||||||| || || || | Sbjct 32451 TAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGG 32392 Query 104424 CAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTA 104483 |||| || | |||||||||||| ||||| || ||||| || ||||| || || | || | Sbjct 32391 CAAAGATCAACCTCTGTTGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAA 32332 Query 104484 CATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTT 104543 | || || | || ||| | ||| ||||||| || || || ||||| || | || | Sbjct 32331 CGTTATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCT 32272 Query 104544 TTACAAATATCTGCAT 104559 | ||||| |||||||| Sbjct 32271 TAACAAAGATCTGCAT 32256 Score = 129 bits (142), Expect = 1e-24 Identities = 141/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | ||| || ||||| ||||||||||| ||||| ||| Sbjct 32741 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 32682 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| ||||| || || |||||||| | || |||||||| ||| Sbjct 32681 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGA 32622 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||| || || ||||| ||| ||||| || || || | || ||| || ||| Sbjct 32621 GGAATACCTTCCTTGTCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTC 32563 Query 104509 TACCT 104513 |||| Sbjct 32562 AACCT 32558 >seq161 Length=77021 Score = 143 bits (158), Expect = 6e-29 Identities = 375/564 (66%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 ||||| | |||| |||||||| ||||| | |||||| | ||| ||||| | || | Sbjct 62156 TACAAGCGTGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATC 62097 Query 268805 ATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCG 268861 || ||||| || || ||| | || || ||| || || || ||||||| Sbjct 62096 CATGACTGGAACAACAGAATGAACGAAAACGAGAGATTTTTCATTTCCAGAGTTCTTGCC 62037 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 ||||| || | | ||| ||||| ||||| ||||| | || || || || | || Sbjct 62036 TTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTTTCCACCGAA 61977 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 || || ||||| || || | |||| ||||| ||||| || || ||||||||||| Sbjct 61976 GTCCAAATTCCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCAC 61917 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040 || || | ||| | || || |||||||| || | || | ||||||| | Sbjct 61916 TCTGAAACTTACTCCTTGTTGATCGATACTTACATCAAGGAC-----CCTAAAGAAAGTG 61862 Query 269041 ACTATTTTCTTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATG 269091 | | | || ||| ||| | || || | | | ||||||| | ||||| Sbjct 61861 AAT-TCTTGTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAATG 61807 Query 269092 GGCTCTGAAATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGC 269148 |||| | | |||||| | || | |||||| || ||||| ||||||| ||||| Sbjct 61806 GGCTTTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGC 61747 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 | | | |||||| | || || || || || |||||| | || || |||||||| || || Sbjct 61746 CTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAG 61687 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| | ||||| || ||||| || || ||||||||||| | || ||||||||||| || Sbjct 61686 AGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCA 61627 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 | |||||| || || || || || Sbjct 61626 CACCGACTTTGCATGCTTGTTGTT 61603 >seq16 Length=26083 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| |||||||| || || || || ||||| || | ||||||||| ||||| | ||| Sbjct 16856 TGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGC 16915 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || || ||||| Sbjct 16916 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 16975 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || || ||| || || || |||||||||||||| || Sbjct 16976 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTT 17035 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 17036 AAAGTCTTGACGAAAATTTGCATCTTG 17062 >seq219 Length=104340 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 41237 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 41178 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAAT 104430 |||||||||||||||||||| | ||| || |||||||| || Sbjct 41177 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGAT 41137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151392307303404