Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766375.2_202014-10- 12] 344 sequences; 11,668,021 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq243 156 1e-32 seq220 125 2e-23 seq271 111 4e-19 >seq243 Length=55186 Score = 156 bits (172), Expect = 1e-32 Identities = 168/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| |||||||| ||||| || || || ||||| ||||| ||| || ||| Sbjct 31339 CAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCCGAC 31398 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| || ||||| || |||||||| ||||||||||| || || Sbjct 31399 ACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAG 31458 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 || | || || || || || || || |||||||| || || |||| | || || ||| | Sbjct 31459 AGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAAC-CTTGTCTGACTACAACAT 31517 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || || || | || |||||||| ||| Sbjct 31518 CCAAAAGGAATCTACTCTTCACTTGGTGTTGAGACTGAGA 31557 Score = 138 bits (152), Expect = 3e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || ||| | || || ||||| ||||| | ||||| ||| ||| ||| Sbjct 30883 CAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCCGAC 30942 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || || || |||||||| ||||| ||||||||||| || || Sbjct 30943 ACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCGGATCAACAG 31002 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | ||||| ||||| || ||||| |||||||| || || |||| | || || ||| | Sbjct 31003 AGGTTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTAGAAC-CTTGTCTGACTACAACAT 31061 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| ||||| || || || | || |||||||| ||| Sbjct 31062 CCAAAAGGAATCTACTCTTCACTTGGTGTTGAGACTGAGA 31101 >seq220 Length=155371 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 146243 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCTGAC 146184 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| || || || ||||| ||| Sbjct 146183 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACCAACAA 146124 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || ||| | |||| || ||| || Sbjct 146123 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACAACATC 146064 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || || || | || |||||| | ||| Sbjct 146063 CAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGA 146025 >seq271 Length=175708 Score = 111 bits (122), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || || ||| | || || || || ||||| | || || ||| || ||||| || Sbjct 127678 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 127619 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||| || | Sbjct 127618 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 127559 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCAAA 178107 ||||| || || || || | ||||| || || || |||| | || || ||| | |||| Sbjct 127558 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTACAACATTCAAA 127500 Query 178108 AAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || |||| | || |||||| | ||| Sbjct 127499 AAGAATCCACTTTGCACTTAGTCTTGAGATTGAGA 127465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203725894554736