Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766415.2_202014-10- 12] 389 sequences; 11,578,561 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq259 138 1e-27 seq190 134 1e-26 seq321 122 8e-23 >seq259 Length=54143 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||||||||||||||| |||| ||| | ||||| || || || Sbjct 29712 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 29771 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | |||| ||| ||||| ||||| || || || || || Sbjct 29772 GATACCATCGACAACGTTAAGTCGAAAATTCA-AGACAAGGAAGGTATCCCTCCAGATCA 29830 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || |||||||| || || ||||||| | | | || || |||||||| Sbjct 29831 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 29890 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || || ||||| ||||| | ||||||||||||||||| || Sbjct 29891 CATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 29938 Score = 116 bits (128), Expect = 3e-21 Identities = 140/188 (74%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||||||| ||||||| | || || || || || Sbjct 29940 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 29999 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | || | ||| |||||| ||||| ||||| || || || || || Sbjct 30000 GACACGATCGA-TAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCGGATCA 30058 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | || |||||||| || || ||||||||| | | || || || ||||| Sbjct 30059 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGATGGTAGAACCTTGTCTGACTACAA 30118 Query 25178 TATTCAAA 25185 || |||| Sbjct 30119 CATCCAAA 30126 Score = 82.4 bits (90), Expect = 7e-11 Identities = 91/120 (76%), Gaps = 1/120 (1%) Strand=Plus/Plus Query 25082 AAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAA 25141 |||| ||| ||||| ||||| ||||| || ||||| || | | ||||||||||| || Sbjct 30623 AAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCAGCAAAGATTGATTTTTGCCGGTAA 30681 Query 25142 ACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||| ||||||||| | | || || || |||||||||||||| || ||||| || || Sbjct 30682 GCAACTAGAAGATGGTAGAACGCTGTCGGACTACAATATTCAAAAGGAGTCCACTCTTCA 30741 >seq190 Length=285656 Score = 134 bits (148), Expect = 1e-26 Identities = 165/221 (75%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 ||||| ||||||||||| ||||| ||||||| | ||||| || || ||||||||||| Sbjct 43971 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 44030 Query 25068 GAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124 || || || ||| |||| | ||| ||||| ||||| || |||||||||||||| | Sbjct 44031 GA--CAATGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATCCCACCTGACCAACAAAGA 44087 Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184 | || ||||| || || ||||| ||||| | | | || || || ||||| |||||| Sbjct 44088 TTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAA 44147 Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||||| | || ||||| | || | ||||| || Sbjct 44148 AAAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 44188 >seq321 Length=107652 Score = 122 bits (134), Expect = 8e-23 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||||||||| ||||| ||||||| | ||||| || || |||||||| || Sbjct 44387 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 44446 Query 25068 GAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGA 25125 || || || ||| || ||| ||||| ||||| || |||||||||||||| | Sbjct 44447 GA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGAT 44504 Query 25126 TTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAA 25185 | || ||||| || || ||||| ||||| | | | ||| | || ||||| || |||| Sbjct 44505 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAA 44564 Query 25186 AAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| ||||||| || | || ||||||| || Sbjct 44565 AGGAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGG 44604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433325945619035