Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766435.2_202014-10- 12] 418 sequences; 11,614,948 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq323 179 7e-40 seq230 165 2e-35 seq304 87.8 3e-12 >seq323 Length=56987 Score = 179 bits (198), Expect = 7e-40 Identities = 172/218 (79%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| |||| |||||||| || || ||||| ||||| || || || || || ||||||| Sbjct 24241 CAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTA 24300 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 |||||| ||||| || || | ||||||||| || || || || |||||||||||||||| Sbjct 24301 GCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAA 24360 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 | || | ||| ||| |||||||| || | ||||| |||||||| || |||||||| | Sbjct 24361 TTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTAC 24420 Query 68434 CCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTA 68471 | || | ||||||||||| |||||||| || |||||| Sbjct 24421 CGGTCAAAGTCTTGACGAAAATCTGCATAAT-CTATTA 24457 Score = 131 bits (144), Expect = 3e-25 Identities = 141/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 68275 TTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGA 68334 |||||||||| || || || | || || |||||||||| |||||| ||||| || || | Sbjct 24034 TTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGCTGCTTACCGGCAAAGATCA 24093 Query 68335 GTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGA 68394 || ||||| || || || || ||||||||||| || || || | ||| ||| |||| Sbjct 24094 ACCTCTGTTGATCCGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGA 24153 Query 68395 TGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454 | ||||| | ||||| || || || ||||||||||| || || | ||||| || || | Sbjct 24154 TCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGA 24213 Query 68455 TCTGCAT 68461 ||||||| Sbjct 24214 TCTGCAT 24220 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| || | ||| || |||||||| ||||| || || || || || || || || ||||| Sbjct 23364 CAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATC 23423 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||||| ||||| ||||| || || | |||||| ||||| || ||||| ||||||||||| Sbjct 23424 TTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC 23483 Query 68369 TTGAATCTTTGCCTT 68383 |||||| || | ||| Sbjct 23484 TTGAATTTTCGACTT 23498 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || | ||| |||||||| || ||||||||||| || || || || || || Sbjct 23872 CAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTC 23931 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| | ||||| || || || || | ||||||||| || || ||||| ||||||||||| Sbjct 23932 TTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTC 23991 Query 68369 TTGAATCTTTGCCTT 68383 |||||| || | ||| Sbjct 23992 TTGAATTTTCGACTT 24006 >seq230 Length=105263 Score = 165 bits (182), Expect = 2e-35 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| |||| ||||| || ||||||||||| || || || || || || || || Sbjct 42134 CAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGAGTTCTACCGTC 42075 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 ||| || ||||| || || || || | |||||||||||| ||||| || ||||||||||| Sbjct 42074 TTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTC 42015 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 ||| ||||| | |||||| || |||||||| | ||||| |||||||| |||||||| Sbjct 42014 TTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATGGT 41955 Query 68429 TTTTCCCGTGAGGGTCTTGACGAA 68452 || || || | ||||| ||||| Sbjct 41954 CTTACCAGTCAAAGTCTTAACGAA 41931 >seq304 Length=103962 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||||||||| || || || ||||||||||| || ||||| | || || ||||| Sbjct 95329 CAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATC 95388 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 ||| || ||||| || || || || | ||||||||||| Sbjct 95389 TTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGT 95426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617584522960