Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766455.2_202014-10-
12] 431 sequences; 11,603,065 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq172 127 4e-24
seq211 120 6e-22
seq160 100 6e-16
seq238 89.7 1e-12
>seq172
Length=339
Score = 127 bits (140), Expect = 4e-24
Identities = 138/183 (75%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || ||||| || |||| |||| || | ||| ||||||||||| || |||||
Sbjct 335 GATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCT 276
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||||||||| || || || |||||||||||||| |||||| |||| || || ||||
Sbjct 275 CTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGT 216
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| || ||||| || ||||| || || || || || |||| ||||| | || || ||
Sbjct 215 GTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTG 156
Query 192534 CAT 192536
|||
Sbjct 155 CAT 153
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| | | || || ||||| || |||| |||||| || |||||||||
Sbjct 154 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 95
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| | || |||| ||| ||||||||||| || ||||| |||||||| ||
Sbjct 94 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGA 35
Query 192427 GGTATTCCTTCTTTATCTTGTATTTT 192452
|| || ||||| || ||||| |||||
Sbjct 34 GGAATACCTTCCTTGTCTTGAATTTT 9
>seq211
Length=51028
Score = 120 bits (132), Expect = 6e-22
Identities = 171/240 (71%), Gaps = 2/240 (1%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
||||||||||| || | || || | |||||| || | ||| || || || ||||||
Sbjct 23763 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 23822
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | |||| | || || | || ||||| |||||||| ||||| |||||||| ||
Sbjct 23823 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 23882
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| ||||| || || || || | ||| || |||||
Sbjct 23883 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 23942
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT--TTTATTAG 192544
||||| | || ||||||||||| || || || || | || |||||||| | ||||||
Sbjct 23943 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 24002
Score = 114 bits (126), Expect = 3e-20
Identities = 135/183 (74%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| || || ||||| || |||| |||| || | || ||||| |||||||| || ||
Sbjct 23582 GATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGCTGCTTACCGGCAAAGATCAACCT 23641
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||||||||| || || || ||||| || || || ||||| || || ||| || |
Sbjct 23642 CTGTTGATCCGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGT 23701
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
|| || ||||| || |||| ||| ||||||||||| || || || |||| ||| |||||
Sbjct 23702 GTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTG 23761
Query 192534 CAT 192536
|||
Sbjct 23762 CAT 23764
>seq160
Length=103867
Score = 100 bits (110), Expect = 6e-16
Identities = 100/130 (77%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358
||| ||| ||||||||||| | | || || ||||||||||| | || || ||| |
Sbjct 40793 GTTCAATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGT 40734
Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418
| || ||||||| |||| | || |||||||| |||||||||||||| ||||| ||||
Sbjct 40733 TGTAGTCAGATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTT 40674
Query 192419 GATCAGGTGG 192428
| ||||||||
Sbjct 40673 GGTCAGGTGG 40664
>seq238
Length=69436
Score = 89.7 bits (98), Expect = 1e-12
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 49821 AAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTT 49880
|| |||||||| || || || ||||| ||||| ||| | || ||||| || ||| |||
Sbjct 31756 AAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTT 31815
Query 49881 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 49940
|| || ||||| | ||||||||||| | ||| || || || ||||| || || ||
Sbjct 31816 AAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAA 31875
Query 49941 AATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 50000
|| | ||| || | | ||||| || | || |||| | ||||||| | | | |||
Sbjct 31876 AAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCT 31935
Query 50001 AATATCCAATTTATAGCCCAATCTGCTTT 50029
||||| ||| |||||| || || ||
Sbjct 31936 TGAATCCATCTTAAAGCCCATTCGGCCTT 31964
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984474563516850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |