Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766455.2_202014-10- 12] 431 sequences; 11,603,065 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq211 172 1e-37 seq172 149 1e-30 seq160 96.9 7e-15 seq341 93.3 8e-14 seq184 91.5 3e-13 >seq211 Length=51028 Score = 172 bits (190), Expect = 1e-37 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || || ||||| || || |||||||| || |||||||||||||||| || || || Sbjct 23796 GTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 23855 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| | |||||||||||||||||| || |||||||| |||||||| || | || Sbjct 23856 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 23915 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || || || ||||| || ||| |||||||| ||||| || || || ||||| ||| Sbjct 23916 ACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 23975 Query 82794 TTTACAAATATCTGCATTAT 82813 || || || |||||||| || Sbjct 23976 TTGACGAAAATCTGCATAAT 23995 Score = 114 bits (126), Expect = 3e-20 Identities = 116/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 82576 ATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTAT 82635 |||| |||| || ||||| | || || | ||| ||||| || || || || ||||| | Sbjct 23376 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 23435 Query 82636 AATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGAT 82695 | || || || ||||||| ||||||||||| || || ||||| || | |||||| || | Sbjct 23436 AGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGT 23495 Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 ||||||| || |||||||| |||||||| || Sbjct 23496 CTGGAGGAATACCTTCCTTGTCTTGAATTTT 23526 >seq172 Length=339 Score = 149 bits (164), Expect = 1e-30 Identities = 120/145 (83%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || || |||| ||||| |||||||| || |||||||||| Sbjct 153 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 94 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||||||||| ||||| || |||||||| || | ||||||||||||||||| Sbjct 93 ACAGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAG 34 Query 82702 GTATTCCTTCCTTATCTTGAATCTT 82726 | || |||||||| |||||||| || Sbjct 33 GAATACCTTCCTTGTCTTGAATTTT 9 Score = 125 bits (138), Expect = 1e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 82626 TGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGT 82685 || || || || ||||| | ||||||| ||||||||||| || |||||||| || | | Sbjct 337 TGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAAT 278 Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT-ACATTTTCAAT 82744 || |||||||| ||||| || ||||| ||||||||||| ||| ||||| || || ||||| Sbjct 277 CTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAAT 219 Query 82745 CGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATAT 82804 || || || ||| || || | ||||| ||||| ||||| | || || || || || Sbjct 218 AGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAAT 159 Query 82805 CTGCAT 82810 ||||| Sbjct 158 TTGCAT 153 >seq160 Length=103867 Score = 96.9 bits (106), Expect = 7e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || | ||| ||||| || || || || || |||| Sbjct 40784 TACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 40725 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||||| ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 40724 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 40665 Query 82702 G 82702 | Sbjct 40664 G 40664 >seq341 Length=102282 Score = 93.3 bits (102), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||| ||||||||||| || || || || || || || Sbjct 93649 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 93708 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTG 82693 | | ||||||| ||||| | ||| || ||||||||||| | ||||||||| Sbjct 93709 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTG 93759 >seq184 Length=171487 Score = 91.5 bits (100), Expect = 3e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||||||| ||| |||||||| || || || || |||| Sbjct 44142 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 44083 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGAT 82681 | | ||||||||||||| | ||| || ||||||||||| Sbjct 44082 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGAT 44043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981821778166109