Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766495.2_202014-10- 12] 389 sequences; 11,590,380 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq139 116 3e-21 seq55 82.4 6e-11 >seq139 Length=49849 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || ||||||| |||||||||||||| || ||||| || ||||| | | Sbjct 33222 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 33163 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| ||||| || ||||| ||| |||| | ||| || ||||| || Sbjct 33162 AGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGA 33103 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||||||| || || | | ||| ||| || || || Sbjct 33102 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACC 33043 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || |||||||| | || ||||||||||||||||| Sbjct 33042 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 32996 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| | ||||| ||| | || || || |||||||| ||||| |||||||| | | Sbjct 32766 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 32707 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | |||| || ||||| ||||| ||| | || | ||| || ||||| || Sbjct 32706 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 32647 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||||||| || || | | ||| |||||| || || | Sbjct 32646 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 32587 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||||||||| || ||||| ||||| ||||| ||||| Sbjct 32586 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 32540 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| || || ||||||| ||| | ||||| |||||||| || ||||| || | | Sbjct 33450 CCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 33391 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || || || || ||||| ||| |||| | |||||| |||||| || Sbjct 33390 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 33331 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || ||||| || |||||| ||| || | | | | ||| ||| || || Sbjct 33330 ATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 33271 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || || ||||||| ||||||||| ||||||||||| Sbjct 33270 TCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 33224 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871 || || || | |||||| || || | ||| | || |||||||||||||||||||| ||| Sbjct 33681 TTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCC 33622 Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931 | || ||| | | || || || || ||||| ||| |||| | ||| ||||| || Sbjct 33621 GACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGA 33562 Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991 || | || || ||||| ||||||| || || | | | | ||| || || || Sbjct 33561 GGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCA 33502 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| || || |||||||| | || ||||||||||||||||| Sbjct 33501 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 33452 >seq55 Length=102908 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| ||| | ||||| |||||||| || ||||| || | | Sbjct 93937 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 93996 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| || ||||| ||| | || | ||| || || || || Sbjct 93997 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 94056 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| || || || || | | | | ||| || || || | Sbjct 94057 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 94116 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | |||||| || ||||| |||||||| ||||| ||||||||||| || Sbjct 94117 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 94166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414570834536266