Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766515.2_202014-10- 12] 402 sequences; 11,597,034 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq135 113 3e-20 >seq135 Length=47795 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || || | |||||||| || | Sbjct 16664 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 16605 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 16604 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 16546 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACG----AACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || || || ||||||| ||||| | | |||| Sbjct 16545 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCT----GATT 16490 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || || |||||||| |||||| | || ||||| | |||| || Sbjct 16489 ACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 16438 Score = 93.3 bits (102), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 23695 AAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAA 23754 |||||| ||||| |||||| | || ||||||||||| | || || ||||| || || Sbjct 16145 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCTGGTAAG 16086 Query 23755 CAACTGGAAGAC----GAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATT 23810 |||||||||||| |||||| | | ||||| ||||| || |||||||| || || Sbjct 16085 CAACTGGAAGACGGTAGAACGCTGTCT----GATTATAACATTCAGAAAGAGTCTACGTT 16030 Query 23811 ACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| || || || ||| |||| || Sbjct 16029 GCATTTGGTGTTGAGATTGAGAGGTGG 16003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007943964216