Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000766615.2_202014-10- 12] 538 sequences; 11,620,179 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq27 107 1e-18 seq390 102 6e-17 seq198 84.2 2e-11 >seq27 Length=22794 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || ||||| ||||| ||||||||||||| || ||| ||| ||||||| Sbjct 8861 ACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 8802 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 8801 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 8742 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 8741 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTA 8682 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 8681 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8650 >seq390 Length=28659 Score = 102 bits (112), Expect = 6e-17 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || ||||||||||||||||||||||| | || ||| ||| ||||||||||| || || Sbjct 10934 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 10993 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| |||| | ||||||||| || || | |||||||| || ||| | | |||| Sbjct 10994 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 11053 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| ||||||| | || ||| | |||||| | || || ||||| || Sbjct 11054 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 11113 Query 18309 TTTACAAAA 18317 || |||||| Sbjct 11114 TTGACAAAA 11122 >seq198 Length=47272 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||| ||||||||||| | || ||| ||| |||||| Sbjct 30854 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCT 30795 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | ||| || || ||| | || | ||| ||||||||| || | ||||| ||||| | Sbjct 30794 AGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGA 30735 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | ||||| | ||| |||||| | || || | ||| || | || Sbjct 30734 ATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTC 30675 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || | ||||| || ||||||||||| Sbjct 30674 CCTGTTAGAGTTTTGACGAAAATTTGCAT 30646 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18122 GTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTG 18181 |||||| || || || |||||||| |||||||| | || ||| ||| |||||| | ||| Sbjct 31077 GTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTG 31018 Query 18182 TTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTG 18241 || || ||| | || | |||||| || || || | |||||||| || ||||| Sbjct 31017 CTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTT 30958 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 ||| || | ||| ||||||| | || || | ||| || | || || || Sbjct 30957 CGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGT 30898 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 || ||| || |||||||||||||| Sbjct 30897 CAGTGTCTTGACAAAAATTTGCAT 30874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379341512688810