Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000767965.1_202014-10- 12] 480 sequences; 11,504,654 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq432 104 2e-17 seq235 100 2e-16 >seq432 Length=22805 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| |||| || || || || || || |||||| ||| ||| | Sbjct 14180 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 14121 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | ||| || || || || |||||| | || || Sbjct 14120 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 14061 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||||||| | |||||||| || || ||| |||||||| | |||| || |||| ||| Sbjct 14060 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 14001 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||||||||| ||| |||| || |||| |||| || Sbjct 14000 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 13951 >seq235 Length=28978 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| |||||||||||| | || |||||||| ||| | || ||||| || || Sbjct 12440 AAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAACAGAGATTGATTTTTGCTGGTAAG 12499 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||| |||||| | ||| || | || ||||| || || |||||||||||||||||| Sbjct 12500 CAACTAGAAGATGGTAGAACCTTGTCTGACTACAACATCCAAAAGGAATCTACTCTTCAC 12559 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||||| |||| |||| || Sbjct 12560 TTGGTGTTGAGATTGAGAGGTGG 12582 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| ||| |||| || || || || ||| || ||| | | Sbjct 12584 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 12643 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| ||||||| || || |||||| | || ||| || Sbjct 12644 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 12703 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || |||||||| |||||| | ||| || | || |||||| Sbjct 12704 CAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 12763 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| || ||||||||| | || || Sbjct 12764 ATTCAAAAGGAGTCCACTCTTCACCTCGTCTT 12795 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || |||||||| || ||| ||| | | Sbjct 11895 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 11954 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| |||||| || || |||||| | || ||||||| Sbjct 11955 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 12014 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || || || || ||||| | ||| || | |||||||| Sbjct 12015 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 12074 Query 29142 ATTCAGAAGGAATCTAC 29158 ||||||||||| || || Sbjct 12075 ATTCAGAAGGAGTCCAC 12091 Score = 87.8 bits (96), Expect = 2e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 29038 TTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTG 29097 ||||| |||||| || || |||||| | || ||||||||||||| | ||||||| Sbjct 12204 TTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATCTTTG 12263 Query 29098 CGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTA 29157 | || || ||||||||||| | ||| || | ||||| || |||||||| || |||| Sbjct 12264 CCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTA 12323 Query 29158 CTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | | || ||||||| |||| |||| || Sbjct 12324 CGTTGCATTTGGTGTTGAGATTGAGAGGTGG 12354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428333494234400