Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000767965.1_202014-10- 12] 480 sequences; 11,504,654 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq235 113 3e-20 >seq235 Length=28978 Score = 113 bits (124), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| || || | |||||||| || | Sbjct 11895 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 11954 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | |||| || ||||| |||||| | || |||||||| Sbjct 11955 GATACCATCGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGGTATCCCTCCAGATCA 12013 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAACGCACTTTAGGCGATT 23785 ||| | || || |||||||| || || || |||||| |||||| | | |||| Sbjct 12014 ACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCT----GATT 12069 Query 23786 ACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||||| || || |||||||| |||||| | || ||||| | |||| || Sbjct 12070 ACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 12121 Score = 104 bits (114), Expect = 2e-17 Identities = 137/187 (73%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 23656 GAAGTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 || ||||| || | |||||| |||| || |||| | |||| || ||||| ||||| Sbjct 12173 GAGGTTGAATCTTCTGACACTATTGACAACGTTAAGTCGAAAA-TTCAAGACAAGGAAGG 12231 Query 23715 TGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGAC----GAAC 23770 | | || ||||||||||| | || || |||||||| || |||||||||||| |||| Sbjct 12232 TATTCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAACTGGAAGACGGTAGAAC 12291 Query 23771 GCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGC 23830 || | | ||||| ||||| || |||||||| || || ||||| || || || ||| Sbjct 12292 GCTGTCT----GATTATAACATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGA 12347 Query 23831 GAGGAGG 23837 |||| || Sbjct 12348 GAGGTGG 12354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338007622643840