Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000768095.1_202014-10- 12] 1,348 sequences; 11,377,261 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq108 360 2e-94 seq1166 185 1e-41 >seq108 Length=7374 Score = 360 bits (398), Expect = 2e-94 Identities = 1337/2077 (64%), Gaps = 55/2077 (3%) Strand=Plus/Minus Query 52804 CAAT-GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTT 52862 |||| ||||||||||| | ||| ||||| | || || | | ||||||||| || || | Sbjct 2934 CAATAGTGAATTGAATTGCAGCAGATGCAGCTTGGGTTCTCAAATAGTACATACCGGTCT 2875 Query 52863 TTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGA-ATAACTCGGATCT 52921 | | || ||||||||||||||||||||||||||||||| ||| | || Sbjct 2874 TCAATCCCTTCTTCCATCCGTAAAAATGCATACTTGTTAGTTTACCCATAGTTGGGGCAC 2815 Query 52922 GCTATATGGATA--TTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCA 52979 | || | ||| |||| ||| ||| |||||| || || | | || || |||| Sbjct 2814 G---TAAGAATAAATTCAAAGAATGAGATTGATCAATATAGACAGAACGATCGGCTGCCA 2758 Query 52980 TTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCT 53038 | || ||||| |||||||||| ||||||||||| ||| || || || || | ||| ||| Sbjct 2757 TGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTCTTGTATAAGTCCTTCAAT-TCT 2699 Query 53039 TCTGGAAGGTTTG-TATTC--TGAATAGATCCACCATCTACCATAATCCTATTCT---TG 53092 | ||||| |||| || | ||||| || ||| | | ||||| || || | Sbjct 2698 TGTGGAACATTTGGTAAGCCTTGAATGGAGCCATTTTGTG---TAATCAGATACTGTTTC 2642 Query 53093 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 53152 || | |||| ||| | | || || | | || | | || || || || Sbjct 2641 ATACCCTCATCCCAAATACCTAAATCAACCAAGTCACGCAGTAAGTAAGGGTTCACAACC 2582 Query 53153 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 53212 || ||||| || || || || | || | ||| ||||| || ||||| | | | Sbjct 2581 TGGAATTCACCGGATAAGACACGACGGGAGTACATATTGGAAGTGACTGGTTCGAAACAT 2522 Query 53213 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTA 53272 ||||||| ||||| ||||| | || |||||||| ||||| ||||||| || | Sbjct 2521 TCATTATAACCCAATATTTGGGATGTGGATGCAGTAGGCATTGGTGCCATGGTCAAGGAA 2462 Query 53273 TTTCTAAGACCGTATGTTCTGATTTTATCTTTTAG--AGGT-TCCCAATTCCAAAGATCC 53329 ||||||| ||| ||| | | || |||||||| |||| ||||||| ||| | | Sbjct 2461 TTTCTAATACC--ATGCT-TCATGATATCTTTTCTTAAGGTGTCCCAATCCCACATGCCG 2405 Query 53330 GACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACA 53389 | ||| ||||| ||||| | | || |||||| Sbjct 2404 TAGGGTTTTTGGTCCCACATATCAAACTGTAGTATACCTTGAGAAGCAGGAGATCCTTGG 2345 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 | || ||||||| || ||||||| ||||||||||||| || || | | | | | Sbjct 2344 AAAGTTCCGTATGGACCGTCCTTCTGAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGA 2285 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAA 53509 ||||| ||||| ||||| | ||||||| | |||||| ||||||||| || Sbjct 2284 TAAATAGTTTCAAAGATTTGGATATTTAGCAAACGGGCTTCCTCAGAATCAAATGGCAAA 2225 Query 53510 TTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTC 53569 ||| || || || | ||| || | ||||||||||| | | | || |||||||||||| Sbjct 2224 CGTAACAGCATGAAAGTGTCAGCGAGACCTTGAACACCCAAAGCAATTGGTCTATGTCTC 2165 Query 53570 TTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGG 53629 |||| || || |||||| || ||| || |||||| ||| || | | | || | Sbjct 2164 ATATTGGATTTTCTCGCTTCTTCAACAGGGTAGTAATTACGATCAATGACTCTGTTTAAA 2105 Query 53630 TTTCTGACAATTACTTTGACCACATCCT-TCAGTTTGAGAAAATCAAATTGTCCATCTAT 53688 || | || ||||| | | || | | | ||| ||| | | ||| | | | Sbjct 2104 TTACGAGTAACAACTTTAGCAATTTCATGTAATTTTTTGAAGTTGTA--TGTGGAAGTCT 2047 Query 53689 TACAAACATG------TTCAATG-------------CAATAGATGCCAGATTACAAACGG 53729 ||| | | | ||||||| ||| || |||| |||||||| | Sbjct 2046 TACCATCCTCAGAAGTTTCAATGAATGCTGGTAAGGCAACGGAAGCCAAGTTACAAACAG 1987 Query 53730 CTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA-AAGATTACTACACTTGATG 53788 || |||| | | | | |||| | || ||| ||| ||| || | |||||||| Sbjct 1986 CTGTTTCATCTGGAGCTGAGTATTCAACAATTTCACAGCATAAGTTTGATG-ACTTGATG 1928 Query 53789 GTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGC 53848 ||||| |||| ||||||| ||| ||||||| |||||||| |||| || ||| || Sbjct 1927 ACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACGAAAGGT 1868 Query 53849 GTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA 53908 |||||||||||| | || | ||| | ||| | | ||| | | || || || | Sbjct 1867 GTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATAATTTTTGGGCTTTGAT---A 1811 Query 53909 GATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAA 53968 | || | |||| | ||||| | ||||| | ||||||||||| || || Sbjct 1810 GTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCACCGTAA 1751 Query 53969 ACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTC 54028 || | || |||||| | ||| | | || | ||| || | || | Sbjct 1750 CAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCG 1691 Query 54029 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 54088 || || ||||| || |||||||||||||| ||||| || | |||||| | | | | Sbjct 1690 ACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATT 1631 Query 54089 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 54148 ||||| || || ||||| ||| ||| | || | | ||||||| |||||| ||| Sbjct 1630 TCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAAGATATCAGCATGCCATGGT 1571 Query 54149 TCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCG 54208 |||| ||| | || | | ||||| | ||| || || ||||| || | || | ||| Sbjct 1570 TCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATAACGGGCG 1511 Query 54209 GTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAG 54268 |||||||| |||| | | ||| ||||| | ||| || || | ||| || || || | Sbjct 1510 GTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGTACCAGCA 1451 Query 54269 ATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTA 54328 || || ||| | | |||||| ||| || |||||| || || || || |||| Sbjct 1450 ATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTG 1391 Query 54329 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 54388 || || || || ||| || || || || || || ||||| ||| || ||| ||||| Sbjct 1390 GAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATG 1331 Query 54389 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGA 54448 || | ||||| |||||||| | ||| || ||||| || || || ||| Sbjct 1330 GCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAACGTTGGA 1271 Query 54449 GAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATA 54508 || ||||| ||||| ||||| ||| | | || ||||| || | ||| | || ||| Sbjct 1270 GAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGCCTCGATA 1211 Query 54509 TCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATC 54568 || | || || |||| |||||| | ||| | | || || || | ||| ||| | Sbjct 1210 TCTCTACCGTGGATGCCTAGTGCGACTCTCATGATTAAATGTTGTGGACGTTCGGCGA-C 1152 Query 54569 TTGTT-GTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 54627 ||| ||| ||| | || || || || |||||||||||||||||||||||| |||| Sbjct 1151 TTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATAACTGTA 1092 Query 54628 -TGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTA 54686 |||||| |||| || || | ||| | ||||| | ||||||||| | || | || | Sbjct 1091 CTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCATGACAA 1033 Query 54687 CATCCATGGTAATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGT 54746 || | | | || || || |||| | || ||| | || |||||| || Sbjct 1032 TATTGTAGACATCATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTGACGTATC 973 Query 54747 TAAATAAATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATA 54806 || | | ||| | | |||| | |||| ||||| | |||| ||| |||| ||| || | Sbjct 972 TATAAAGATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAATTAGAAA 913 Query 54807 CGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATG 54843 ||| |||||||| ||||| |||| ||||| ||||| Sbjct 912 TGGCAATTCTAGCAGCTAGGGTGGCGTAATCTGGATG 876 >seq1166 Length=6891 Score = 185 bits (204), Expect = 1e-41 Identities = 399/594 (67%), Gaps = 6/594 (1%) Strand=Plus/Minus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| ||| ||||| || ||| ||| | ||| |||||||||| || |||||||||||| Sbjct 6701 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 6642 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || || | |||||||| | || | |||||| | ||| || ||||| ||||| || || Sbjct 6641 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 6582 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--- 24302 || || || | ||||| | | |||||||||| |||||||| ||| | |||| Sbjct 6581 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCA 6522 Query 24303 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 24362 ||| || ||||| || |||||| |||||||||| | || || || | Sbjct 6521 GCGTCTTGGATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTGA 6462 Query 24363 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 24422 || ||||| || | | | |||| ||| || || | || ||||| ||||| | Sbjct 6461 ATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGTATCGATCAACAAG 6402 Query 24423 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 24482 || |||| || ||||| |||||||| ||||| || |||||||||| | ||| Sbjct 6401 GAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTTTGCC 6342 Query 24483 TCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 24542 || | ||| || ||||| | | || ||| | || |||||||| || || |||||| Sbjct 6341 TCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCA 6282 Query 24543 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCG-TCTGGT--GTTAGT 24599 || || ||||| || | || || ||| || | ||| ||| || || Sbjct 6281 GAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTCTCGTTCATTCTG 6222 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 || ||||| |||| |||||| ||||| | ||| | |||||| | ||||| || || || Sbjct 6221 TTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAAGCT 6162 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACA 24713 || || || || | |||||| ||||| || | || || |||| |||| Sbjct 6161 TCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACA 6108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593711595791040