Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000768095.1_202014-10- 12] 1,348 sequences; 11,377,261 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1166 102 8e-17 seq308 98.7 1e-15 >seq1166 Length=6891 Score = 102 bits (112), Expect = 8e-17 Identities = 363/561 (65%), Gaps = 15/561 (3%) Strand=Plus/Minus Query 132876 CAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAG 132935 |||||| ||||| |||||| ||||||||| ||||| || ||||| || | || | Sbjct 6711 CAAATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAA 6652 Query 132936 TTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGC 132995 ||||||| || || || |||||||| | || | ||||| | ||| || |||| ||| Sbjct 6651 TTCGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGC 6592 Query 132996 GAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAA 133055 || || || || ||||| || || | || || || || || || | || || || Sbjct 6591 AAAGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAA 6532 Query 133056 CGTGGCTTCTTTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACG 133114 | ||| || | || | |||||| | | |||||||||||||| || || | Sbjct 6531 CAAGGCGTCAGCGTCTTG-GATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTG 6473 Query 133115 GCATCGTTTCGATGGCGTTCAACAAACGGAGTT---TCTCTTCCGAGGAACGCACGTAGG 133171 | || || | ||||| || ||||| || || | |||| | | | ||| | Sbjct 6472 GGATGGTGTGAATGGCATTGAACAA---GAATTCACTTTCTTTAGGGTCCTTGATGTAAG 6416 Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 | ||||| | || || |||| ||||| | || || || |||||| || |||| Sbjct 6415 TATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGT 6356 Query 133232 AAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGT 133291 | || | | ||||| | || ||||| | ||| || |||| ||||| | Sbjct 6355 AGAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCAT 6296 Query 133292 TGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTG--ATGAAATGGCGCTC 133349 | || || ||||| |||||||||||||| || || || | |||||| | ||| Sbjct 6295 TAACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAAC--TCTGGAAATGAAAAATCTCTC 6238 Query 133350 GTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGAC 133406 ||| ||||||| | | |||||| | | ||||| |||| || | || || | Sbjct 6237 GTTCTCGTTCATTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGC 6178 Query 133407 GGTCCAAAACGACGCCTCGGC 133427 |||||| || || || ||||| Sbjct 6177 GGTCCAGAAAGAAGCTTCGGC 6157 >seq308 Length=17113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || ||||||||||| | || || || || || Sbjct 5635 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 5694 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| ||||||| ||||| || || || || | || || Sbjct 5695 GACACGATCGATAACG-TTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 5753 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | || || || ||||| || |||| | ||| | |||||||| Sbjct 5754 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 5813 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || |||||| || | |||||||| || Sbjct 5814 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 5861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164372088320