Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000768095.1_202014-10- 12] 1,348 sequences; 11,377,261 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1299 233 2e-56 seq1166 205 1e-47 seq108 170 2e-37 >seq1299 Length=15423 Score = 233 bits (258), Expect = 2e-56 Identities = 1117/1763 (63%), Gaps = 60/1763 (3%) Strand=Plus/Minus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||| || ||||||||||| |||||||| |||| || ||||||||||||||| Sbjct 7358 GTTCTTAAGTAGTACATACCAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTA 7299 Query 47073 GTTAATTTAGA-ATAACTAGGTTCT-GAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 || | ||| || | ||| || | || | || ||| | || ||| |||||| | Sbjct 7298 GTAATCTTACCCATTGAT-GGTGCTTGCAAGAA-AAGATTCAAGGAATGAGACTGATCGA 7241 Query 47131 T--AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 | | ||| | | |||||| ||||||| | ||| | |||| | || ||||| || Sbjct 7240 TGTAGATGG--CACGATCAGCAGCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGAC 7183 Query 47189 TGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--TTGAATAGATCCTC 47244 ||||| || |||| |||||| |||| ||| | ||| | || ||||||||| || Sbjct 7182 GGTTTTGTATAATTCCTTTAAT-TCTTGTGGCACATTTGGTAAGCCTTGAATAGAACCA- 7125 Query 47245 Cgttttctataatt-----ttgttttttaat-tcatttgaccaaagttttcgttc-agtt 47297 |||| | ||||| |||||| || | |||| ||||| | || | | Sbjct 7124 --TTTTGTGTAATTAGATATTGTTTCATACTATCATC---CCAAATACCCAGGTCGACTA 7070 Query 47298 aat---gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGG 47354 ||| || | ||| ||| ||||||||| ||| ||||| ||||| || || | ||| Sbjct 7069 AATCACGTAGT--AAATATG--GATTAACAACTTGGAATTCACCAGACAGGACACGACGA 7014 Query 47355 CTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTT 47414 || || || || |||||| | | ||||||||| |||| |||||| | |||| Sbjct 7013 GAGTACATGTTTGAGGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTT 6954 Query 47415 GATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTN 47473 || || || ||||| | ||| | || | | | ||||||| |||| ||| || | Sbjct 6953 GAGGCGGTTGGCATTGGTGCCA-TAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTC 6895 Query 47474 NNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTG 47533 || ||||||||| | | |||| | | ||||| | ||| |||| Sbjct 6894 CTTTCTTAAGGTTTCCCAATCCCACATGCCAAATGGTTTAGCGTTCCACATATCGAATTG 6835 Query 47534 AAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGC 47593 | ||| || || |||||||| | | | || ||| ||| | | || || Sbjct 6834 TAAAATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGC 6775 Query 47594 GAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | |||||| ||||| | | | || || || ||||| || |||| | ||||||| Sbjct 6774 CAATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAG 6715 Query 47654 ATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNA-ATGTATCTGCCAATC 47712 | | |||||| |||||||| || || | | ||||| ||||| | Sbjct 6714 AGTTTGAGCTTCTTCCGATTCAAAGGG-TAGACGCAACATCATATAAGTATCGGCCAAAC 6656 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 | || ||||||| | |||| |||||||| | |||| ||| ||| || || | || Sbjct 6655 CCTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAATTTCTAGCCTCGGGAACTG 6596 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | || || |||| | | || | |||| || Sbjct 6595 GATAGTAATTACGGTCGATAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGT 6536 Query 47833 TTAATTTATTAAAATCAAA-CTTGTTATTTATAACA--------AACCT------ATTA- 47876 ||| | | |||| | | |||| ||| || || ||||| || Sbjct 6535 GCAATCTCTCGAAATTATAGCTTGCAGTTT-TACCATCTTCTGAAACCTCAACGAATGCT 6477 Query 47877 ---AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933 || || ||||| |||| |||||| || || |||| || | ||||| | Sbjct 6476 GGTAGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCAGGGGAGGAATATTCGACG 6417 Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||||| ||||| |||| ||||||||||||| || || || || || | || Sbjct 6416 ATTTCACAACATAAATTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTG 6357 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||||||||||||| |||| ||| |||||||| || |||||| |||| | || | || Sbjct 6356 TTACATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATG 6297 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | | | | ||||| | | | || | | || |||||| | Sbjct 6296 GCATACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGA 6240 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||||| | ||||||||||| || |||||| |||||| || || || | || Sbjct 6239 GTATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGC 6180 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 | | || | |||| | |||| | || || | |||| || | ||| || ||||| Sbjct 6179 GAAAATAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCAT 6120 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 ||||| || ||||| || | | | |||||| || ||| | || | | || Sbjct 6119 AGAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCG 6060 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | |||||| | ||||| ||||||||||| || || | | || | |||| |||| Sbjct 6059 ACAAAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAGGCACCAGGTCTC 6000 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| || || || | ||| | ||||||||| || |||| | | ||| || | Sbjct 5999 TTGTTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATC 5940 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 | || ||||| |||| ||||| || | |||||| || | | | || || | Sbjct 5939 AACCCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTG 5880 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| | ||||||||| |||| || || | |||||| ||| | |||||| Sbjct 5879 ATATGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCA 5820 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||| ||||| ||| ||||| |||| | || ||||| ||||||||| ||| Sbjct 5819 TAAATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGA 5760 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || || || | || ||||| |||||||| || ||| | || || | || | | Sbjct 5759 TGTGGCGTACCAGCGTTGAATAAAGTTGGAGAGGCGTGAGTGAAGTATCTTAACGACATC 5700 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGC 48713 || ||||| || | | ||||| || ||||| | ||| ||||||| | |||||| Sbjct 5699 AAATTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGC 5640 Query 48714 ATTAACATATATTGAGGTCTTTC 48736 |||| || || ||||| | ||| Sbjct 5639 ATTACCAAATGCTGAGGACGTTC 5617 >seq1166 Length=6891 Score = 205 bits (226), Expect = 1e-47 Identities = 430/632 (68%), Gaps = 13/632 (2%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| ||| |||||||| || || | || |||||||||| |||||||| || ||| Sbjct 6701 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 6642 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||||||| ||||||| ||||| ||||| |||||||| || || ||||| || || Sbjct 6641 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 6582 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATC 19130 || || || | |||||| | | ||||| |||||||||||||| ||| ||| | || || Sbjct 6581 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTC 6523 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | | || |||||| | | ||||| || ||||||| | ||| || || | Sbjct 6522 AGCGTCTTGGATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTG 6463 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAA 19247 || | ||| || | | | || | || ||| || || || | || | ||| ||||| Sbjct 6462 AATGGCATTGAACA-AGA-ATTCACT-TTCTTTAGGGTCCTTGATGTAAGTATCGATCAA 6406 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 || ||| |||| || ||||||||||| || || || || ||||| |||| | Sbjct 6405 CAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTT 6346 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 ||| |||| || || ||||| | | || |||| ||||| ||||||||||| || || Sbjct 6345 TGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACC 6286 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 ||| ||| || ||||| || | || ||| ||| | | || | | ||| | Sbjct 6285 GTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGT-TCTCGTTCA 6227 Query 19428 T----GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAG 19483 | | ||||| |||| ||||| ||||| ||||| | ||||||| | ||||| |||| Sbjct 6226 TTCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAG 6167 Query 19484 AAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAA 19543 |||| || || || || | ||| || ||| | || | ||||| || | |||| Sbjct 6166 AAGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAG 6107 Query 19544 ATCTATTTTTATTTTCTTTAAGAATAGGTTCC 19575 ||| | || | ||| || | | ||||||| Sbjct 6106 TTCTCTCCTTGTCTTCATTCAACAAAGGTTCC 6075 >seq108 Length=7374 Score = 170 bits (188), Expect = 2e-37 Identities = 846/1333 (63%), Gaps = 43/1333 (3%) Strand=Plus/Minus Query 47895 TTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCA 47954 ||||| |||||| |||| |||| | |||| | |||||| |||| || Sbjct 1996 TTACAAACAGCTGTTTCATCTGGAGCTGAGTATTCAACAATTTCACAGCATAAGTTTGAT 1937 Query 47955 CATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGC 48014 | ||||| ||| || |||| |||||| ||||||| || |||||||||| Sbjct 1936 GACTTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACA 1877 Query 48015 ATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCC 48074 | |||||||| |||||||| | |||| ||| | || || | ||| | | | | | | Sbjct 1876 ACGAAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGC 1818 Query 48075 TTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCA 48134 ||| | || || | | || | ||||| ||||||| |||||| || Sbjct 1817 TTTG--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCG 1760 Query 48135 TCCCCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTC 48193 || || || ||| | || || |||||| | | ||| | | |||| ||| | | Sbjct 1759 TCACCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCC 1701 Query 48194 ATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCT 48253 || | || || | |||| || | ||| || ||||| ||||| || ||||| || Sbjct 1700 ATTTTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCT 1641 Query 48254 AGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGC 48313 | | | ||| || || || ||| | ||| |||| ||| || | |||||||| Sbjct 1640 TGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAAGATATCAGC 1581 Query 48314 ATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTAT 48373 |||||||||||| | || | || | |||| |||| ||||||||| || || || | Sbjct 1580 ATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAAC 1521 Query 48374 ATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATT 48433 ||| | ||| || || || |||| | | ||| || | | ||| || || |||| || Sbjct 1520 ATAACGGGCGGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTT 1461 Query 48434 GGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACC 48493 || || | ||| ||| ||| | | | || ||| || | ||| |||||||| Sbjct 1460 TGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACC 1401 Query 48494 TGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATC 48553 || |||| || || | |||||| || | ||| || ||||| || || ||| || Sbjct 1400 AGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTC 1341 Query 48554 ATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAA 48613 || |||| | | |||||| |||||||| || | ||| || | ||| || Sbjct 1340 CTCCTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAA 1281 Query 48614 TAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAAC 48673 || |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | | Sbjct 1280 CAACGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGC 1221 Query 48674 AGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCT 48733 || || ||||| | || || |||| | || | ||| | | || ||| || | Sbjct 1220 AGCCTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATGATTAAATGTTGTGGACG 1161 Query 48734 TTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 ||| | | || || ||| | | | ||| || |||||| |||||||||||||| Sbjct 1160 TTCGGCGACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAA 1101 Query 48794 ATAGTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT 48852 ||| |||| |||||| || | |||| | ||||| || || | | | ||||| | || Sbjct 1100 ATAACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTT 1042 Query 48853 -TAT----ATACT----ACATCCATTACATTTTTTGATA-------TA-----------A 48885 || ||| | |||| ||| | | | || | || | Sbjct 1041 CCATGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCA 983 Query 48886 TTGA-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGA 48944 |||| | | ||||||||||| ||||| | | |||| |||| | |||| |||||| Sbjct 982 TTGACGTATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGT 923 Query 48945 AGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACAT 49004 | |||||| || | ||||||||||||| | || ||||||||||||| || || ||| Sbjct 922 AAATTAGAAATGGCAATTCTAGCAGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CAT 864 Query 49005 GTACTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATAT 49063 || | || |||| || ||||| | |||| ||| | || || |||||| ||| | Sbjct 863 ATAAGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGAC 804 Query 49064 TCCTTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCA 49121 || ||| | | | || | | || || | || ||||| | ||| | ||| Sbjct 803 ACCAGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCA 746 Query 49122 TAACATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCG 49181 || ||||| | ||| | || ||||| ||||| || | | |||||||||||| Sbjct 745 TAGCATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCG 686 Query 49182 TCACGTTTTATAA 49194 || | |||||||| Sbjct 685 TCTC-TTTTATAA 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099328466720