Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000768095.1_202014-10- 12] 1,348 sequences; 11,377,261 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq308 134 2e-26 seq898 123 4e-23 seq168 111 2e-19 >seq308 Length=17113 Score = 134 bits (148), Expect = 2e-26 Identities = 176/243 (72%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 155810 TTTATGTAATAAA--ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTA 155867 |||| ||||| | ||||| || || | || || ||||| || ||||| || ||||| Sbjct 5392 TTTAACTAATAGATTATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTG 5451 Query 155868 GAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGC 155927 ||||| ||| ||| |||| || ||||| || ||||| ||||| || ||||| Sbjct 5452 GAAGTTGAATCTTCCGATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGT 5511 Query 155928 ATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACT 155987 || |||||||| |||||||||||||| | ||||||||||||||| ||||| ||||| Sbjct 5512 ATCCCTCCAGATCAACAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACG 5571 Query 155988 TTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGC 156047 | || ||||| || || || ||| | || | ||| | ||| |||| ||||||| Sbjct 5572 CTGTCTGATTACAACATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGT 5631 Query 156048 GGT 156050 ||| Sbjct 5632 GGT 5634 Score = 127 bits (140), Expect = 3e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || ||| |||| || || ||||| || |||| || ||| |||| Sbjct 5863 ATGCAAATTTTCGTGAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 5922 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| ||||| || ||||| ||||| || ||||| || |||||||| || Sbjct 5923 GACACTATTGACAACGTTAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 5982 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||||||||| || || |||||| ||||| | || || || ||| Sbjct 5983 CAAAGATTGATCTTTGCCGGTAAACAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 6042 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| ||| | || ||||| | || || || || || || ||| Sbjct 6043 AT-TCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGGT 6090 Score = 125 bits (138), Expect = 1e-23 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || ||||| || ||||| || || ||||| || ||| || Sbjct 5635 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 5694 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||||| || || || ||||| || |||||||| ||| Sbjct 5695 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 5754 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||||||||| ||||| ||||| || || || || | Sbjct 5755 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACA-- 5812 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || ||||| ||||| ||||| ||| Sbjct 5813 ACATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGGT 5862 >seq898 Length=22942 Score = 123 bits (136), Expect = 4e-23 Identities = 169/234 (72%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || | || || || || || || |||||||| | ||||| ||| | Sbjct 14055 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 13996 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || || ||| || ||||| || ||||| || || || || Sbjct 13995 TCTGACACTATTGACAATGTCAAGTCTAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 13936 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| |||||||| | |||||| |||||||| || || || Sbjct 13935 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 13876 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | | ||||||| || | || || || || || || ||||| ||||| |||| Sbjct 13875 A--ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGGTG 13824 >seq168 Length=17614 Score = 111 bits (122), Expect = 2e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 155836 TTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAA 155895 |||| || |||||||| || || || || || ||||| ||| |||||| | ||| | Sbjct 648 TTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATTGACA 589 Query 155896 ACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTT 155955 | || || || || ||||| || ||||| || || || || |||||||||||||| | Sbjct 588 ATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 529 Query 155956 ATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GA 156013 ||| |||||||| | ||||| |||||| |||| || || || || ||||| || Sbjct 528 TTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACAT--CCAAAAGGA 471 Query 156014 GGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | || | ||||| || || ||||||||||| ||| Sbjct 470 ATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGGT 434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731859667956800