Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000773925.1_202014-11- 10] 38 sequences; 12,534,098 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 140 6e-28 seq7 134 3e-26 >seq2 Length=1091404 Score = 140 bits (154), Expect = 6e-28 Identities = 235/331 (71%), Gaps = 12/331 (4%) Strand=Plus/Plus Query 35295 ATACAGACGCCAAAGAATTGGCCAAG-AAGAAGATACACATCTGGAACGCTAATGGGTCG 35353 |||||||||| || |||| | || ||| | || | || ||| ||| |||||| || Sbjct 624065 ATACAGACGCTAACCTATTGTCTGAGCAAGGTGTTA-AGATTTGGGACGGTAATGGATCT 624123 Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413 || |||| ||| || | | ||||| | ||||| || |||||| |||| ||||| Sbjct 624124 CGTGAATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTT 624183 Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473 |||||||| |||||| | |||||||||||| |||| | || || | ||| |||||| Sbjct 624184 TACGGATTTCAATGGAGGCATTTTGGTGCTAAATACAAGACGTGCGATGACGACTATACT 624243 Query 35474 GGAAAGGGTATTGATCAATTG-GCCA--ATATAC-TAAAGACCCTGAGAGA-AAATCCAG 35528 ||| | ||||||||||||||| || ||||| |||| || | ||| |||||| Sbjct 624244 GGACAAGGTATTGATCAATTGAAACAGGTTATACATAAA----CT-AAAGACAAATCCCT 624298 Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 | |||||||| || ||||||| || ||||| || ||| || || |||||| | | Sbjct 624299 ACGATAGAAGAATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGC 624358 Query 35589 CTCCATGCCACATGACTGCTCAATTTTATGT 35619 | |||||||| || | | || || ||||| Sbjct 624359 CGCCATGCCATATTTTTTCACAGTTCTATGT 624389 >seq7 Length=751537 Score = 134 bits (148), Expect = 3e-26 Identities = 299/444 (67%), Gaps = 15/444 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| | ||||||| |||| || ||| | || || |||||||||||| Sbjct 352585 GTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGG 352526 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||||| |||| ||| | |||| ||||| || || || | ||| ||| Sbjct 352525 TTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGAC 352466 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||||||| || |||| | |||| || | | Sbjct 352465 GAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---ACAA 352413 Query 102098 TCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || ||| ||| |||||||||| || || || |||||||||| || Sbjct 352412 ACCAGACCCAGCCATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATA 352353 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | || | || ||| || | || |||||| | || |||| ||| || Sbjct 352352 CTTCTTGGACGCCTTACCAGTTGCTTTGCTAGGTATGAACGCTGACTTAATGAACCAATA 352293 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271 | |||| || || || || | ||| ||||||| | || || ||||| |||| || Sbjct 352292 CGTTGAGTTCGTCGCCGACAGACTGTTGGTTGCTTTCGGTAACAAGAAA--TACTACAAG 352235 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || ||||||||| |||||||| || || ||| | | |||||||||||| || Sbjct 352234 GTCGAAAACCCCTTCGATTTCATGGAAAACATCTCCTTGGCCGGTAAGACCAACTTCTTC 352175 Query 102332 GAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||| | || || ||| Sbjct 352174 GAAAAGAGAGTTTCTGACTACCAA 352151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583518196290