Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F000773925.1_202014-11- 10] 38 sequences; 12,534,098 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq35 185 2e-41 seq33 147 4e-30 seq12 129 1e-24 seq8 114 2e-20 >seq35 Length=488768 Score = 185 bits (204), Expect = 2e-41 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||||| || | |||| || | |||| || || || || Sbjct 399434 AATTTGCATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTT 399375 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || |||||| ||| |||| ||| || || |||||||| ||||||||||| Sbjct 399374 GTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTG 399315 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || |||||||||||||| ||||| |||| | || |||||| ||||| Sbjct 399314 ATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGA 399255 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||| ||||| |||||||| || |||||||| ||||| || || |||||||| Sbjct 399254 AGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 399198 Score = 179 bits (198), Expect = 7e-40 Identities = 182/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||||||||||| | |||| |||||| |||| |||||| ||| || Sbjct 399206 AATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTT 399147 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| || || | ||||||| || || | ||| || || |||||||| ||||| ||||| Sbjct 399146 ATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTG 399087 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || ||||| || ||||| ||||| | || | || ||||| || || Sbjct 399086 ATCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGA 399027 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| ||||| ||||| |||||||| |||||||| || || || ||||| |||||||| Sbjct 399026 AGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 398970 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| ||||| | | || || || | || | ||| || |||||| ||||| | Sbjct 399654 TACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCG 399595 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | | ||||||| ||| |||| ||| || ||||||||||| ||||| || || || |||| Sbjct 399594 ACAGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAG 399535 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | || ||||| || ||||| ||||| | || | || |||||| || ||||| |||| Sbjct 399534 GAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAA 399475 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| |||||||| |||||||| || || || ||||| |||||||| Sbjct 399474 CCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 399426 Score = 138 bits (152), Expect = 2e-27 Identities = 178/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | | || || ||||| || || | ||| || ||| || || || Sbjct 398743 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 398684 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||||||| || |||| || || |||||||| || ||||| |||||||| ||| Sbjct 398683 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 398624 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| ||||| | || | || || ||||||||||| ||| Sbjct 398623 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 398564 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT--TTTATTAG 193368 ||||| | ||||| |||||||| || | || || || || || ||||| | |||||| Sbjct 398563 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAATCTATTAG 398504 Query 193369 TAAAA 193373 | ||| Sbjct 398503 TTAAA 398499 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||||| || | |||| || | |||| || || || || Sbjct 398978 AATTTGCATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTT 398919 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || |||||| ||| |||| || || |||||||| || || |||||||| Sbjct 398918 GTAGTCAGACAAGGTTCTACCATCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTG 398859 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| ||||| || ||||| || || || ||||| | || | || || || ||||| Sbjct 398858 ATCCGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGA 398799 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| |||| ||| || |||||||| || | || || ||||| || ||||| Sbjct 398798 GGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 398742 >seq33 Length=609583 Score = 147 bits (162), Expect = 4e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||||||||| | |||| || | |||| || || || || |||||||| Sbjct 572781 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 572840 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || |||||| ||| || ||||| || || ||||| || ||||| ||||| ||||| || Sbjct 572841 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 572900 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || ||||| || |||| || | ||| |||||| || ||||| ||||| Sbjct 572901 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 572960 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || || ||||| ||||| |||| || || || || |||||||| || Sbjct 572961 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 573011 >seq12 Length=429631 Score = 129 bits (142), Expect = 1e-24 Identities = 161/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||| | || | ||||| || | ||||| ||| || ||||| Sbjct 367201 ATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA 367260 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || |||||| || || ||||| || || ||||| || ||||| ||||| ||||| Sbjct 367261 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 367320 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| |||||| || ||||| ||| Sbjct 367321 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 367380 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAA 193351 ||||| | ||| || || ||||| || | || || ||||| Sbjct 367381 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 367421 >seq8 Length=678555 Score = 114 bits (126), Expect = 2e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||| | |||| ||| || || | || || || || ||||| Sbjct 629960 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 630019 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 |||| |||||| || || ||||| || || ||||| || ||||| ||||| ||||| Sbjct 630020 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 630079 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| || | ||| ||| || || ||||| ||| Sbjct 630080 GGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCA 630139 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGT 193336 ||||| | ||| || || ||||| || Sbjct 630140 ACTTCCAAAGTGATGGTCTTACCAGT 630165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653972664160