Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001029075.1_202015-06- 17] 17 sequences; 12,150,889 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 138 9e-28 seq15 96.9 3e-15 >seq2 Length=812978 Score = 138 bits (152), Expect = 9e-28 Identities = 446/686 (65%), Gaps = 26/686 (4%) Strand=Plus/Minus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 399964 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 399905 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 399904 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 399851 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 399850 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 399791 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | || || || ||| Sbjct 399790 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGYAAGTACGTTGGTTCT 399734 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGG 19536 || |||||||| | || ||| ||| || || |||| |||| | | | |||| Sbjct 399733 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGG-GCYAAGGG 399675 Query 19537 CGCAAAAG-TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAG 19595 | || ||| || || ||||| || | ||||| |||| | | | ||||| || Sbjct 399674 TGAGGAATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGCAGAG 399615 Query 19596 AGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAA 19649 |||||| || || | ||| ||| |||| ||| || |||||| | | | || Sbjct 399614 AGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAGCTAA 399555 Query 19650 ATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGA 19709 | | || |||||| | || ||||||||||||| |||||||| ||||| ||| | || Sbjct 399554 AATGGATGGTGTTGATCAGTTGAATAATATTTTGGTTATTGGTATGACCAATCGTAAAGA 399495 Query 19710 ATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTT 19769 ||||||||||| || | || || || ||| | || ||| | | | |||||| | || Sbjct 399494 TTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTCATTT 399435 Query 19770 ACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAA 19829 |||||||||| ||| | | ||||||| |||| || || | ||| | |||| Sbjct 399434 ACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGACGAAGAAAATGAGGGAAAA 399375 Query 19830 TAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAG 19889 ||| | | | |||||||| | ||| || | || || || ||||||| Sbjct 399374 TAATATGATGAGCGACGATGTTAACTTAGCTGAGTTAGCTGCATTAACAAAAAACTTCTC 399315 Query 19890 CGGCGCAGAACTTGAGGGATTAGTGA 19915 || || || ||||||| ||||||| Sbjct 399314 TGGTGCTGAGATTGAGGGTTTAGTGA 399289 >seq15 Length=1091170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 356/561 (63%), Gaps = 45/561 (8%) Strand=Plus/Minus Query 40829 ATATTTGTCTAGCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGG 40888 |||||| || || || || |||||||| | | ||| ||||| || || |||||||| Sbjct 467185 ATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTTTATGG 467126 Query 40889 ATTTCAGTCGCGACATTTTGGAGCAAAATATGACACTATGTACTCTGAT---TATACCAA 40945 |||||| | | | |||||||| || ||||| | || || | ||| ||||| Sbjct 467125 ATTTCAATGGAGGCATTTTGGTGCTAAATACAAGAC---GTGCGATGACGACTATACTGG 467069 Query 40946 TAAAGGAATGGATCAATT---ACAGTGCGTTATAGATACGATTAAATCCGATCCC---GA 40999 |||| || |||||||| |||| ||||| ||| | || | ||||| || Sbjct 467068 ACAAGGTATTGATCAATTGAAACAG---GTTATTCATAAACTWAAGACAAATCCCTACGA 467012 Query 41000 TAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCC 41059 ||| || || || || | || ||||||||| | || | | ||||| ||||| Sbjct 467011 TAGAAGA---ATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGCC 466955 Query 41060 ACCTTGTCATTTGTTATGTCAGTTTTACGTTTG------CAATG---GTGAA-------- 41102 || || ||| | || | ||||| || || | ||| | | ||| Sbjct 466954 RCCATGCCATATTTTTTCACAGTTCTATGTCAGTTTCCCCAAAGAAGGAGAAGGATCCGG 466895 Query 41103 ----------CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCC 41152 || ||||| |||||| ||| | || | || ||||| | || || || Sbjct 466894 TAAGCCCCGCCTTTCATGCTTATTGTACCAACGTTCTTGYGATATGGGGTTGGGAGTACC 466835 Query 41153 GTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 |||||||| || |||||| || | || |||||||| | ||| | | | | Sbjct 466834 RTTTAACATTGCATCATATGCTTTGTTGACTAGAATGATTGCTAAAGTTGTCGACATGGA 466775 Query 41213 ACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 || ||||| || |||| || || || |||| |||| |||| | | ||||| || | Sbjct 466774 GCCAGGTGAGTTCATTCATACTTTGGGGGATGCACATGTTTATAAAGACCACATTGATGC 466715 Query 41273 GTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGC 41332 || | ||||||| | | |||| || |||||||| || | ||| |||||| | | Sbjct 466714 CTTGAAAGAACAAATCWCCAGAAATCCAAGACCATTCCCGAAACTAAAGATTAAAAGGGA 466655 Query 41333 TGTTGAAAACATTGATGATTT 41353 ||| || ||||||||||||| Sbjct 466654 CGTTAAAGACATTGATGATTT 466634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455917652085