Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001051215.1_202015-07-
09] 17 sequences; 12,086,345 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq12 140 2e-28
seq9 109 4e-19
>seq12
Length=1062294
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 452686 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 452745
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 452746 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 452780
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 461823 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 461882
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 461883 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 461917
Score = 125 bits (138), Expect = 5e-24
Identities = 168/233 (72%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||| | | | ||| | ||| | ||| |||||| ||||| ||||||||||
Sbjct 64948 TACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAG 65007
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| |||| |||| |||| || || |||||||| || | | |||||||||
Sbjct 65008 ACA----GCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCT 65063
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| |||| ||||| ||||| |||||| ||| || || | || ||||| | |
Sbjct 65064 GGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGAT 65123
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||||||| ||||| || |||||||| ||||| || || ||||| ||||||||
Sbjct 65124 TCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 65176
Score = 120 bits (132), Expect = 2e-22
Identities = 164/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||||| | ||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 64720 TACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 64779
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | | || |||| || || |||||||| || | | |||||||| | |
Sbjct 64780 ACAAGGTTCTACCATCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCCGGAG 64839
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| |||||| ||||| ||| || || | || || || |||||
Sbjct 64840 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCAA 64899
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| ||||| || || |||||||| ||||| || || || || ||||||||
Sbjct 64900 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 64948
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
|||||||||||| | ||||||||| |||||||| |||||||| || ||||| ||||
Sbjct 64264 TACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAG 64323
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | | || |||| ||| || || ||||| || | | |||||||| | |
Sbjct 64324 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 64383
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| |||||||| || |||||| || || || | | ||| || | |||||
Sbjct 64384 GGATACCTTCTTTATCTTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 64443
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| |||| || ||||| || || || | ||||| ||||| || |||||
Sbjct 64444 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64492
Score = 107 bits (118), Expect = 1e-18
Identities = 164/233 (70%), Gaps = 8/233 (3%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | |||||||||||| | || ||| || ||||| || |||||||
Sbjct 64492 TACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAG 64551
Query 38149 ACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCG 38204
||| |||| |||| || | ||| || || ||||| || | | |||||||||
Sbjct 64552 ACA----GCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTGATCT 64607
Query 38205 GAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT 38264
| || | ||||| ||||| |||||| ||| || || | || ||| || | |
Sbjct 64608 GGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGAT 64667
Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
||||| |||| || ||||| ||||| |||| || || || || || |||||
Sbjct 64668 TCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 64720
Score = 105 bits (116), Expect = 4e-18
Identities = 168/239 (70%), Gaps = 9/239 (4%)
Strand=Plus/Plus
Query 38084 ATCA-TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGT 38142
|||| |||||||| ||||| | ||| || | ||||||||| |||||||||||||||||
Sbjct 64030 ATCAGTTACCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGT 64089
Query 38143 AATCAGACAAAACACGTT----CGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGT 38198
| || |||| |||| | || |||| ||| || |||||||| || | | |||
Sbjct 64090 AGTCCGACA----GCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGC 64145
Query 38199 TGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCT 38258
|| || | || | ||||| ||||| |||||| ||| || || | | ||| ||
Sbjct 64146 TGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCA 64205
Query 38259 CCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| |||||| |||| || ||||| ||||| |||| || || || || || |||||
Sbjct 64206 GAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 64264
Score = 105 bits (116), Expect = 4e-18
Identities = 162/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149
|||||||||||| | ||| ||||| || ||||| |||||||| || ||||| || ||
Sbjct 484686 ACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGA 484627
Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209
|||| | | || || ||||| || || ||||| || | | |||||| || | ||
Sbjct 484626 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 484567
Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269
| ||||| ||||| || || ||| ||||| | | ||| || | ||||||
Sbjct 484566 AATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 484507
Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| | |||||||| ||||| || || || || ||||| || ||||| ||
Sbjct 484506 TTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 484456
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 454674 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 454733
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 454734 GCCAATATTTAGCTTTA 454750
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||| |||||||||||||||| |||||| |||| |||||||||||||||||||||| |
Sbjct 463811 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCTC 463870
Query 20007 GGTAATATTTAGCCTTA 20023
| |||||||||| |||
Sbjct 463871 GCCAATATTTAGCTTTA 463887
>seq9
Length=434899
Score = 109 bits (120), Expect = 4e-19
Identities = 156/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||||||||| | ||| || || || | |||| || |||||||| ||||| ||||
Sbjct 69275 TACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 69216
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|||| | |||| || ||||| || || ||||| || | | |||||| || | |
Sbjct 69215 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 69156
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| ||||| ||||| ||| ||| ||| ||||| | | ||| || | |||||
Sbjct 69155 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 69096
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308
|||| || || || || ||||| ||||| || || || ||
Sbjct 69095 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 69056
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334947130603127
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