Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001051215.1_202015-07- 09] 17 sequences; 12,086,345 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq12 107 1e-18 seq9 91.5 1e-13 >seq12 Length=1062294 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || ||||||| | ||| | ||||| ||| ||| || ||||| ||||||||||| Sbjct 64950 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 65009 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | |||| || | ||||||||||||||| |||| || |||||||| | || Sbjct 65010 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 65069 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || || || | | | || || | || || Sbjct 65070 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 65129 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || |||||||| || || ||||||||||| Sbjct 65130 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 65176 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| | ||| |||||| ||||| || |||||||| || ||| | |||| Sbjct 64508 CAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTC 64567 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| |||||||| ||||| |||| || |||||||| | |||| || |||||||| Sbjct 64568 TTCCAGTTGCTTACCAGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTC 64627 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||| || || || | | || || || | || ||||| | || || || Sbjct 64628 TTGAATTTTCGACTTAACGTTGTCGATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGT 64687 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || |||| || || |||||||| ||||| Sbjct 64688 CTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 64720 >seq9 Length=434899 Score = 91.5 bits (100), Expect = 1e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| ||||| | ||| | |||| ||||| |||||||| ||||| Sbjct 69237 TCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAG 69178 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||||| || | || | || |||||||| ||||||| || ||| Sbjct 69177 ATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTG 69118 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || |||| || || || || || |||||||| || ||| Sbjct 69117 TCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACA 69058 Query 48756 AAA 48758 ||| Sbjct 69057 AAA 69055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937521074491