Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001078085.1_202015-07- 15] 361 sequences; 11,356,874 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq336 167 5e-36 seq21 152 1e-31 seq212 132 1e-25 seq52 132 1e-25 seq8 125 2e-23 >seq336 Length=43383 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | || | ||| || ||||| ||||||||||| ||||| ||| Sbjct 27457 ATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCA 27398 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| ||||| || || ||||| || | || |||||||| ||| Sbjct 27397 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 27338 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||| || | || || || || | || ||| || ||| Sbjct 27337 GGAATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCGGAAGATTCA 27278 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||||||||| || ||||| || ||||| || ||||| Sbjct 27277 ACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 27228 Score = 167 bits (184), Expect = 5e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || || | || | || | |||||||| || || || || |||||| Sbjct 27685 ATACCACCTCTCAGTCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 27626 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||| ||||||||||| || ||||||||||| | ||||||||||| ||| Sbjct 27625 GACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGA 27566 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATTTTCTACGGTATCGCTAGGTTC 104508 || || ||||||||||| ||||| ||| ||||| || || || | || ||| || ||| Sbjct 27565 GGGATACCTTCTTTATCTTGAAT-TTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTC 27507 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || |||||||| || || || ||||| || || || ||||| Sbjct 27506 AACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 27456 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| ||||| || || |||||||| |||||||||||||| || Sbjct 27880 GTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGTTTACCG 27821 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || || || || ||||| || ||||| || || ||||| |||| || Sbjct 27820 GCAAAGATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGACTTA 27761 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || || || ||| |||||||| || ||||||||||| || ||||| Sbjct 27760 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 27701 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 27700 TTGACGAAAATTTGCAT 27684 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || || || || || ||||| || ||||||||||||||||| || || || Sbjct 27196 GTAGATTCCTTTTGGATGTTGTAATCAGACAGCGTTCTACCGTCTTCTAGCTGCTTACCG 27137 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || |||||||| ||||| || ||||| || || ||||| || | || Sbjct 27136 GCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAATTTTCGACTTA 27077 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||| || ||| || || | ||| || || ||||| || | || Sbjct 27076 ACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 27017 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 27016 TTGACGAAAATCTGCAT 27000 >seq21 Length=26429 Score = 152 bits (168), Expect = 1e-31 Identities = 377/564 (67%), Gaps = 26/564 (5%) Strand=Plus/Minus Query 268745 TACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTA 268804 ||||| | |||| |||||||| ||||| | |||||| | ||| ||||| | || | Sbjct 1207 TACAAGCGTGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATC 1148 Query 268805 ATAGATTGGAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCG 268861 || ||||| || || ||| |||| || ||| || || || ||||||| Sbjct 1147 CATGACTGGAACAACAGAATGAACGAGAACGAGAGATTTTTCATTTCCAGAGTTCTTGCC 1088 Query 268862 TTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAG 268921 ||||| || | | ||| ||||| ||||| ||||| | || || || |||| || Sbjct 1087 TTTTTCGCCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAA 1028 Query 268922 GTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCAT 268981 || || ||||| || || | |||| ||||| ||||| || || ||||||||||| Sbjct 1027 GTCCAAATTCCAGAGGCAAAGAGTTTCTACGGTTTCCAAATCATGATTGAAAATATTCAC 968 Query 268982 TCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-G 269040 || || | ||| | || || |||||||| || | || | ||||||| | Sbjct 967 TCTGAAACTTACTCCTTGTTGATCGATACTTACATCAAGGAC-----CCTAAAGAAAGTG 913 Query 269041 ACTATTTTCTTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATG 269091 | | | || ||| ||| | || || | | | ||||||| | ||||| Sbjct 912 AAT-TCTTGTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAATG 858 Query 269092 GGCTCTGAAATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGC 269148 |||| | | |||||| | || | |||||| || ||||| ||||||| ||||| Sbjct 857 GGCTTTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTTGCCTTTGC 798 Query 269149 CGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAG 269208 | | | |||||| | || || || || || |||||| | || || |||||||| || || Sbjct 797 CTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGGTTGAAAAAGAG 738 Query 269209 AGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACA 269268 ||| | ||||| || ||||| || || ||||||||||| | || ||||||||||| || Sbjct 737 AGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGACGAAGGTTTGCA 678 Query 269269 CTGCGACTTCGCTTGTTTATTATT 269292 | |||||| || || || || || Sbjct 677 CACCGACTTTGCATGCTTGTTGTT 654 >seq212 Length=174401 Score = 132 bits (146), Expect = 1e-25 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || || || |||||||| ||||| || |||||| Sbjct 127375 ATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA 127434 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 127435 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 127494 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 127495 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 127554 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | || || ||||| Sbjct 127555 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 127595 >seq52 Length=67542 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 27958 ATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 27899 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||||||||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 27898 GATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 27839 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || ||||| || | ||| || | ||| Sbjct 27838 GGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGATGATTCA 27779 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || || | || || ||||||||||| Sbjct 27778 ACTTCCAAAGTGATGGTCTTACCAGT 27753 >seq8 Length=20982 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 |||| |||||||| || || || || ||||| || | ||||||||| ||||| | ||| Sbjct 12354 TGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGC 12413 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || || ||||| Sbjct 12414 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTG 12473 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || || ||| || || || |||||||||||||| || Sbjct 12474 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTT 12533 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 12534 AAAGTCTTGACGAAAATTTGCATCTTG 12560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151393074422588