Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001578295.1_202016-03- 02] 890 sequences; 11,613,512 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq479 140 6e-28 seq468 105 1e-17 >seq479 Length=41401 Score = 140 bits (154), Expect = 6e-28 Identities = 235/331 (71%), Gaps = 12/331 (4%) Strand=Plus/Minus Query 35295 ATACAGACGCCAAAGAATTGGCCAAG-AAGAAGATACACATCTGGAACGCTAATGGGTCG 35353 |||||||||| || |||| | || ||| | || | || ||| ||| |||||| || Sbjct 18575 ATACAGACGCTAACCTATTGTCTGAGCAAGGTGTTA-AGATTTGGGACGGTAATGGATCT 18517 Query 35354 CGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTA 35413 || |||| ||| || | | ||||| | ||||| || |||||| |||| ||||| Sbjct 18516 CGTGAATATTTAGATAAGATGGGGTTCAAAGATAGGAAAGTAGGAGATCTGGGGCCCGTT 18457 Query 35414 TACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACT 35473 |||||||| |||||| | |||||||||||| |||| | || || | ||| |||||| Sbjct 18456 TACGGATTTCAATGGAGGCATTTTGGTGCTAAATACAAGACGTGCGATGACGACTATACT 18397 Query 35474 GGAAAGGGTATTGATCAATTG-GCCA--ATATAC-TAAAGACCCTGAGAGA-AAATCCAG 35528 ||| | ||||||||||||||| || ||||| |||| || | ||| |||||| Sbjct 18396 GGACAAGGTATTGATCAATTGAAACAGGTTATACATAAA----CT-AAAGACAAATCCCT 18342 Query 35529 ATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTC 35588 | |||||||| || ||||||| || ||||| || ||| || || |||||| | | Sbjct 18341 ACGATAGAAGAATCATTATGAGTGCCTGGAACCCAGCTGATTTTGACAAAATGGCTTTGC 18282 Query 35589 CTCCATGCCACATGACTGCTCAATTTTATGT 35619 | |||||||| || | | || || ||||| Sbjct 18281 CGCCATGCCATATTTTTTCACAGTTCTATGT 18251 >seq468 Length=42372 Score = 105 bits (116), Expect = 1e-17 Identities = 264/396 (67%), Gaps = 15/396 (4%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 ||||||||||| | ||||||| |||| || ||| | || || |||||||||||| Sbjct 38425 GTTGCCTTTGCCTCCATTGAAGGTGTCTTTTTCTCCGGTTCCTTTGCCTCCATTTTCTGG 38484 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | || || || ||||| |||| ||| | |||| ||||| || || || | ||| ||| Sbjct 38485 TTGAAAAAGAGAGGTATGATGCCCGGTTTAACCTTTTCCAACGAATTGATCTGTAGAGAC 38544 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 |||||| | || ||||||||||||| || |||| | |||| || | | Sbjct 38545 GAAGGTTTGCACACCGACTTTGCATGCTTGTTGTTCGCCCA----TTTGAAGA---ACAA 38597 Query 102098 TCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATT 102153 | ||| || ||| ||| |||||||||| || || || |||||||||| || Sbjct 38598 ACCAGACCCAGCCATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGATA 38657 Query 102154 TCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTA 102213 || | || | || ||| || | || |||||| | || |||| ||| || Sbjct 38658 CTTCTTGGACGCCTTACCAGTTGCTTTGCTAGGTATGAACGCTGACTTAATGAACCAATA 38717 Query 102214 CATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAAT 102271 | |||| || || || || | ||| ||||||| | || || ||||| |||| || Sbjct 38718 CGTTGAGTTCGTCGCCGACAGACTGTTGGTTGCTTTCGGTAACAAGAAA--TACTACAAG 38775 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCC 102307 || ||||||||| |||||||| || || ||| Sbjct 38776 GTCGAAAACCCCTTCGATTTCATGGAAAACATCTCC 38811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989572715649950