Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001578295.1_202016-03- 02] 890 sequences; 11,613,512 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq168 233 2e-56 seq468 210 2e-49 seq185 168 8e-37 >seq168 Length=54671 Score = 233 bits (258), Expect = 2e-56 Identities = 1117/1763 (63%), Gaps = 60/1763 (3%) Strand=Plus/Plus Query 47013 GTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTA 47072 |||| ||| || ||||||||||| |||||||| |||| || ||||||||||||||| Sbjct 52088 GTTCTTAAGTAGTACATACCAGTTTTTAAACCCTTCTTCCAACCGTAGAAATGCATACTA 52147 Query 47073 GTTAATTTAGA-ATAACTAGGTTCT-GAAATATGAATATTAAGAGATTGACTCTGATCAA 47130 || | ||| || | ||| || | || | || ||| | || ||| |||||| | Sbjct 52148 GTAATCTTACCCATTGAT-GGTGCTTGCAAGAA-AAGATTCAAGGAATGAGACTGATCGA 52205 Query 47131 T--AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATAC 47188 | | ||| | | |||||| ||||||| | ||| | |||| | || ||||| || Sbjct 52206 TGTAGATGG--CACGATCAGCAGCCATATTGATAATGGTCTTTTGAGAGATTTCCCAGAC 52263 Query 47189 TGTTTTATA-AATTTGTTTAATGTCTTCTGGGAGATTAG-TATT--TTGAATAGATCCTC 47244 ||||| || |||| || ||| |||| ||| | ||| | || ||||||||| || Sbjct 52264 GGTTTTGTATAATTCCTTCAAT-TCTTGTGGCACATTTGGTAAGCCTTGAATAGAACCA- 52321 Query 47245 Cgttttctataatt-----ttgttttttaat-tcatttgaccaaagttttcgttc-agtt 47297 |||| | ||||| |||||| || | |||| ||||| | || | | Sbjct 52322 --TTTTGTGTAATTAGATATTGTTTCATACTATCATC---CCAAATACCCAGGTCGACTA 52376 Query 47298 aat---gtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGG 47354 ||| || | ||| ||| ||||||||| ||| ||||| ||||| || || | ||| Sbjct 52377 AATCACGTAGT--AAATATG--GATTAACAACTTGGAATTCACCAGACAGGACACGACGA 52432 Query 47355 CTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTT 47414 || || || || |||||| | ||||||||| |||| |||||| | |||| Sbjct 52433 GAGTACATGTTTGAGGTCACTGGTTCGAAGCATTCATTATAACCAAGAATTTGGGAAGTT 52492 Query 47415 GATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTN 47473 || || || ||||| | ||| | || | | | ||||||| |||| ||| || | Sbjct 52493 GAGGCGGTTGGCATTGGTGCCA-TAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTC 52551 Query 47474 NNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTG 47533 || ||||||||| | | |||| | | ||||| | ||| |||| Sbjct 52552 CTTTCTTAAGGTTTCCCAATCCCACATGCCAAATGGTTTAGCGTTCCACATATCGAATTG 52611 Query 47534 AAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGC 47593 | ||| || ||| |||||||| | | | || ||| ||| | | || || Sbjct 52612 TAAAATACCCTTAGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGC 52671 Query 47594 GAGTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAG 47653 | |||||| ||||| | | | || || || ||||| || |||| | ||||||| Sbjct 52672 CAATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAG 52731 Query 47654 ATTCCTTGCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNA-ATGTATCTGCCAATC 47712 | | |||||| |||||||| || || | | ||||| ||||| | Sbjct 52732 AGTTTGAGCTTCTTCCGATTCAAAGGG-TAGACGCAACATCATATAAGTATCGGCCAAAC 52790 Query 47713 CTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATG 47772 | || ||||||| | |||| |||||||| | |||| ||| ||| || || | || Sbjct 52791 CCTGGACACCAAGAGCAATAGGTCTATGCTTCATATTTGAATTTCTAGCCTCGGGAACTG 52850 Query 47773 GATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTC 47832 |||| | || || |||| | | || | |||| || Sbjct 52851 GATAGTAATTACGGTCGATAACTCTGTTCAAGTTGTGAGTAATGACTTTAGCAATCTCGT 52910 Query 47833 TTAATTTATTAAAATCAAA-CTTGTTATTTATAACA--------AACCT------ATTA- 47876 |||| | | |||| | | |||| ||| || || ||||| || Sbjct 52911 GTAATCTCTCGAAATTATAGCTTGCAGTTT-TACCATCTTCTGAAACCTCAACGAATGCT 52969 Query 47877 ---AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATT 47933 || || ||||| |||| |||||| || || |||| || | ||||| | Sbjct 52970 GGTAGGGCAATAGAAGCTAAATTACAAACTGCAGTTTCATCCGGGGAGGAATATTCGACG 53029 Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||||| ||||| |||| ||||||||||||| || || || || || | || Sbjct 53030 ATTTCACAACATAAATTAGATGATTTGATAGTACCTAAGTTCTGTTGGTTTGTCTTCCTG 53089 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 |||||||||||||| |||| ||| |||||||| || |||||| |||| | || | || Sbjct 53090 TTACATGCGTCCTTATAAACCATGAAAGGTGTACCTGTTTCTGTCTGTGCTTGCAAAATG 53149 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | | | | ||||| | | | || | | || |||||| | Sbjct 53150 GCATACCACA-ACTTTTGGGCTTTA--ATTGTTTTACCACGACCTTCTCTTTCGTAACGA 53206 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||||| | ||||||||||| || |||||| |||||| || || || | || Sbjct 53207 GTATATAGTTCTTCAAATTCATCACCCCACACATCATCTAAACCTGGGGCAGCACTGGGC 53266 Query 48174 CACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAA 48233 | | ||| | |||| | |||| | || || | |||| || | ||| || ||||| Sbjct 53267 GAAAACAAAGTCCAAGGCCCATCCTCTTGAACACGTTTCATGAAAAGATCAGGGATCCAT 53326 Query 48234 AGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCA 48293 ||||| || ||||| || | | | |||||| || ||| | || | | || Sbjct 53327 AGAGCAGGGAACAAATCTCTTGCACGAATTTCTTCCTTACCATGTGTTTTTCTGATATCG 53386 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 | |||||| | ||||| ||||||||||| || || | | || | |||| |||| Sbjct 53387 ACAAAGTCGAAGATATCTGCATGCCATGGCTCCAAGAAAAGGGCGAAAGCACCAGGTCTC 53446 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||||| || || || | ||| | ||||||||| || |||| | | ||| || | Sbjct 53447 TTGTTACCACCCTGGTCCACATAACGGGCAGTATTATTGAAAACACGAATCATAGGAATC 53506 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTA 48473 | || ||||| |||| ||||| || | |||||| || | | | || || | Sbjct 53507 AACCCGTTTGAAGTACCGTTGGTACCAGCGATATAAGAACCTGTGGAACGGATGTTGTTG 53566 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 || || ||| | ||||||||| |||| || || | |||||| ||| | |||||| Sbjct 53567 ATATGAAGACCAACACCACCTGCAGTTTTGGAAATCATAGCACATTCTTTCAAAGTATCA 53626 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 ||||| ||||| ||| ||||| |||| | || ||||| ||||||||| ||| Sbjct 53627 TAAATACCTTCGATAGAGTCATCCTTCATGGCAATTAAGAAACATGAAGACATTTGAGGA 53686 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 || || || | || ||||| ||||| || || ||| | || || | || | | Sbjct 53687 TGTGGCGTACCAGCGTTGAATAAAGTTGGGGAAGCGTGAGTGAAGTATCTTAACGACATC 53746 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGC 48713 || ||||| || | | ||||| || ||||| | ||| ||||||| | |||||| Sbjct 53747 AAATTATAAGTCTTCAGCACAGATTCGATATCGCTACCATGGATACCTAGCGCCACACGC 53806 Query 48714 ATTAACATATATTGAGGTCTTTC 48736 |||| || || ||||| | ||| Sbjct 53807 ATTACCAAATGCTGAGGACGTTC 53829 >seq468 Length=42372 Score = 210 bits (232), Expect = 2e-49 Identities = 430/631 (68%), Gaps = 11/631 (2%) Strand=Plus/Minus Query 18952 AACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAA 19011 |||| ||| |||||||| || || | || |||||||||| |||||||| || ||| Sbjct 38579 AACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAA 38520 Query 19012 AATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCA 19071 || |||||||| ||||||| ||||| ||||| |||||||| || || ||||| || || Sbjct 38519 AAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCG 38460 Query 19072 GAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATC 19130 || || || | |||||| | | ||||| |||||||||||||| ||| ||| | || || Sbjct 38459 GAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCA-AACAAGGCGTC 38401 Query 19131 ATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTC 19190 | | ||||||||| | | ||||| || ||||||| | ||| || || | Sbjct 38400 AGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTCACCGATTTCTGGGATGGTGTG 38341 Query 19191 TATAGAATTAAATAGATACATACGCTCATCTGTA---TCTTTAACATATGCATCTATCAA 19247 || | ||| || | | | || | || ||| || || || | || | ||| ||||| Sbjct 38340 AATGGCATTGAACA-AGA-ATTCACT-TTCTTTAGGGTCCTTGATGTAAGTATCGATCAA 38284 Query 19248 TAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCT 19307 || ||| |||| || ||||||||||| || || || || ||||| |||| | Sbjct 38283 CAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTAGAAACTCTT 38224 Query 19308 TGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCC 19367 ||| |||| || || ||||| | | || |||| ||||| ||||||||||| || || Sbjct 38223 TGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACC 38164 Query 19368 ATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA 19427 ||| ||| || ||||| || | || ||| ||| | | || | | | | | Sbjct 38163 GTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTTTTCGTTCAT 38104 Query 19428 T---GTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGA 19484 | | ||||| |||| ||||| ||||| ||||| | ||||||| | ||||| ||||| Sbjct 38103 TCTGTTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGA 38044 Query 19485 AGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 ||| || || || || | ||| || ||| | || | ||||| || | |||| Sbjct 38043 AGCTTCGGCACGCTTGTAGGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGT 37984 Query 19545 TCTATTTTTATTTTCTTTAAGAATAGGTTCC 19575 ||| | || | ||| || | | ||||||| Sbjct 37983 TCTCTCCTTGTCTTCATTCAACAAAGGTTCC 37953 >seq185 Length=15859 Score = 168 bits (186), Expect = 8e-37 Identities = 808/1270 (64%), Gaps = 43/1270 (3%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 ||||| ||| || |||| |||||| ||||||| || |||||||||| | Sbjct 10234 TTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTTACAAGCATCCTTGTAAACAACG 10175 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | |||| ||| | || || | ||| | | | | | |||| Sbjct 10174 AAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGAATACCATA-ATTTTTGGGCTTT 10116 Query 48078 ATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCC 48137 | || || | | || | ||||| ||||||| |||||| || || Sbjct 10115 G--ATAGTCTTACCACGACCTTCTTTCTCGTAGCGGGTATATAGAGCCTCAAACTCGTCA 10058 Query 48138 CCATACACATTATCT-AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATC 48196 || || ||| | || || |||||| | | ||| | | |||| ||| | ||| Sbjct 10057 CCGTA-ACAATCGCTTAAACCAGGAGCTGATGTTGGAGAGAATAATGTCCAGGTCCCATT 9999 Query 48197 ATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGT 48256 | || || | |||| || | ||| || ||||| ||||| || ||||| || | Sbjct 9998 TTCTTCGACACGCTTCATGAAAAGATCAGGAATCCATAGAGCAGGGAACAAATCTCTTGC 9939 Query 48257 TCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATG 48316 | | ||| || || || ||| | ||| |||| ||| || | |||||||||||| Sbjct 9938 ACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATCAATAAAATCAAATATATCAGCATG 9879 Query 48317 CCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATA 48376 ||||||||| | || | || | |||| |||| ||||||||| || || || | ||| Sbjct 9878 CCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCTTTTATTACCACCCTGGTCAACATA 9819 Query 48377 TCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGT 48436 | |||||| || || |||| | | ||| || | | ||| || || |||| || || Sbjct 9818 ACGGGCAGTGTTATTGAAAACACGAATCATAGGAATTAAACCGTTAGAAGTACCGTTTGT 9759 Query 48437 TCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGC 48496 || | ||| ||| ||| | | | || ||| || | ||| |||||||| || Sbjct 9758 ACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGC 9699 Query 48497 CATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATC 48556 |||| || || | |||||| || | ||| || ||||| || || ||| || || Sbjct 9698 AGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGTCGTAAATCCCCTCGATAGAGTCCTC 9639 Query 48557 TATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAA 48616 |||| | | |||||| |||||||| || | ||| || | ||| || || Sbjct 9638 CTTCATGGCAACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCGGCATTGAACAA 9579 Query 48617 TGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGA 48676 |||||||| || ||| |||| |||| || | ||| ||||| ||||| | | ||| Sbjct 9578 CGTTGGAGAGGCGTGAGTAAAATATTTTAGAGACATCAAGTTATACGTTTCTAAAGCAGC 9519 Query 48677 ATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTC 48736 || ||||| | || || |||| | || | ||| | | || ||| || | ||| Sbjct 9518 CTCGATATCTCTACCGTGGATGCCTAGTGCGACTCTCATAATTAAATGTTGTGGACGTTC 9459 Query 48737 AACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATA 48796 | | || || ||| | | | ||| || |||||| ||||||||||||||||| Sbjct 9458 GGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAATA 9399 Query 48797 GTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TA 48854 |||| |||||| || | |||| | ||||| || || | | | ||||| | || | Sbjct 9398 ACTGTACTGAAAA-TCTCTGTCATAGACAATTGCGGAGTTCAATTTATCCTTGTTTTCCA 9340 Query 48855 T----ATACT----ACATCCATTACATTTTTTGATA-------TA-----------ATTG 48888 | ||| | |||| ||| | | | || | || |||| Sbjct 9339 TGACAATATTGTAGACAT-CATCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCATTG 9281 Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947 | | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | | Sbjct 9280 ACGTATCTATAAAGATCTTCGACAACCTTAGAAAATTGTTTTGTGGTTTGTTTATGTAAA 9221 Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007 ||||| || | ||||| || |||| | || ||||||||||||| || || ||| || Sbjct 9220 TTAGAAATGGCAATTCTGGCCGCTAGGGTGGCGTAATCTGGATGAACAGTAGT-CATATA 9162 Query 49008 CTAG-ATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCC 49066 | || |||| || ||||| | |||| ||| | || || |||||| ||| | || Sbjct 9161 AGCGCATGTTTCAGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCTTCATAGACACC 9102 Query 49067 TTGAATAACTTTCATT--GCTATATTTACTGGATCTATATGATCCATATCCAGTCCATAA 49124 ||| | | | || | | || || | || ||||| | ||| | ||||| Sbjct 9101 AGAAATGA--TACGTTGGGTGACCTTAACGGCGTCGATATGTTTTGGATCTAAACCATAG 9044 Query 49125 CATAAtttttttATTCTAGATGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCA 49184 ||||| | ||| | || ||||| ||||| || | | |||||||||||||| Sbjct 9043 CATAAGCGTGATATACGAGCGGTAATCTTATCGAATTGGACAGGTTCTTTACGACCGTCT 8984 Query 49185 CGTTTTATAA 49194 | |||||||| Sbjct 8983 C-TTTTATAA 8975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102546539600