Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001578295.1_202016-03-
02] 890 sequences; 11,613,512 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq78 147 4e-30
seq13 145 1e-29
seq143 143 5e-29
seq27 118 2e-21
seq468 93.3 8e-14
>seq78
Length=23380
Score = 147 bits (162), Expect = 4e-30
Identities = 167/224 (75%), Gaps = 0/224 (0%)
Strand=Plus/Plus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| ||||||||||| | || || || ||||||||||| | || || || || ||
Sbjct 5604 ATGATACCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAG 5663
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| |||| || || |||| |||||||| ||||||||||| || ||||| |||||||||
Sbjct 5664 TCAGATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 5723
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || ||||| || ||||| || || || ||||| || || || || |||
Sbjct 5724 GGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGAT 5783
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAA 172060
|| ||||| | ||| ||||| |||||||| || || |||| |||
Sbjct 5784 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 5827
>seq13
Length=67703
Score = 145 bits (160), Expect = 1e-29
Identities = 163/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896
|| ||||||||||| | || || ||||| || ||||| | ||||| ||| || ||
Sbjct 31189 ATGATACCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAG 31130
Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956
|| || || | || |||| |||||||| ||||||||||| || ||||| |||||||||
Sbjct 31129 TCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCA 31070
Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016
||||| || ||||| || ||||| || || || ||||| ||||| || || |||
Sbjct 31069 GGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGAT 31010
Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 172054
|| ||||| | ||| ||||| |||||||| || || ||
Sbjct 31009 TCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTT 30972
>seq143
Length=17934
Score = 143 bits (158), Expect = 5e-29
Identities = 175/239 (73%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893
||| || ||||||||| | || || || || |||| ||||| || || || ||
Sbjct 8486 TTCTTACCACCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTG 8545
Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953
|| || || |||| || | || |||||||| ||||||||||| || ||||| ||||||
Sbjct 8546 TAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGG 8605
Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013
|||||||| || ||||| || ||||| || || || ||||| ||||| || ||
Sbjct 8606 TCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAA 8665
Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072
||||| ||||| || ||||| || ||||| ||||| || || | ||| || ||||| ||
Sbjct 8666 GATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8724
>seq27
Length=27770
Score = 118 bits (130), Expect = 2e-21
Identities = 164/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| || | || || | |||||| || | ||| || ||| || |||||
Sbjct 341 ATACCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCA 400
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| | | || |||| || | || ||||| ||||| || ||||| ||||| || ||
Sbjct 401 GACAGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGA 460
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| ||||| || || || || ||||| || |||||
Sbjct 461 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 520
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| | || ||||||||||| || || || || | ||| ||||||||
Sbjct 521 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 570
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
||||||||||| | || || || || || | ||||| || || || || || ||
Sbjct 113 ATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA 172
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
|| || | || |||| || | || ||||| ||||| || || |||||||| || ||
Sbjct 173 GACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGTTGATCTGGA 232
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || || || ||||| || || ||| || || || || |||||
Sbjct 233 GGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCA 292
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| |||| ||| ||||||||||| || || || |||| || ||||||||
Sbjct 293 ACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 342
>seq468
Length=42372
Score = 93.3 bits (102), Expect = 8e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 39123 AAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTT 39182
|| |||||||| || || || ||||||||||| ||| | || ||||| || ||| |||
Sbjct 38573 AAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATTCGTTGGAAAAGGTT 38514
Query 39183 AATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAG 39242
|| || ||||| | ||||||||||| | ||| || || || ||||| || || ||
Sbjct 38513 AAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAAAGGAACCGGAGAAA 38454
Query 39243 AATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCT 39302
|| | ||| || | | ||||| || | || |||| | ||||||| | | | |||
Sbjct 38453 AAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACAAGGCGTCAGCGTCT 38394
Query 39303 AAAATCCAATTTATGGCCCAATCTGCTTT 39331
|||||| ||| ||||| || || ||
Sbjct 38393 TGAATCCATCTTAAAGCCCATTCGGCCTT 38365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905125930362000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |