Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001578385.1_202016-03- 02] 3,038 sequences; 10,012,846 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2325 179 3e-40 >seq2325 Length=5997 Score = 179 bits (198), Expect = 3e-40 Identities = 562/857 (66%), Gaps = 39/857 (5%) Strand=Plus/Minus Query 12842 TTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTT 12901 || ||||||||| ||||| || || |||||| ||||| || ||||| || || Sbjct 2557 TTGGACATAACACCAGCCTTTTGGTAGTCAGAAACTCTCTTTTCGAAGAAGTTAGTCTTA 2498 Query 12902 CCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA-TAGTATTTTTT 12960 || | || || || |||||||| |||||||| || |||| ||| | |||||||| || Sbjct 2497 CCGGCCAAGGAGATGTTTTCCATGAAATCGAAGGGGTTTT-CGACCTTGTAGTATTTCTT 2439 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 || || | | |||| |||||| || || ||||| | ||| || |||||||| || Sbjct 2438 GTTACCGAAAGCGACCAACAGTCTGTCGGCGACGAACTCAACGTATTGGTTCATTAAGTC 2379 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGt---ttttttCTAT 13077 | |||||| |||| || || || | || || || |||| ||| ||| || Sbjct 2378 AGCGTTCATACCTAGCAAAGCAACTGGTAAGGCGTCC---AAGAAGTATCTTTGTTCAAT 2322 Query 13078 ATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGAT----A 13133 || || || ||| | || || | | | | || | || || |||| | | Sbjct 2321 TTCCACAGCCTCGGTGACAATTTTT-TCA--ACAATGGCTGGGTCTGG-TTTGTTCTTCA 2266 Query 13134 GATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCT 13193 ||| |||| || |||||||| || |||||| ||||| ||||||| || | | Sbjct 2265 AATGGGCGAACAACAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTACAGATCAATT 2206 Query 13194 CGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAA 13253 |||| ||||| |||| ||| ||||| | |||| ||||| | ||| || || | |||| Sbjct 2205 CGTTGGAAAAGGTTAAACCGGGCATCATACCTCTCTTTTTCAACCAGAAAATGGAGGCAA 2146 Query 13254 ACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACG 13313 | ||||| || ||||| | ||||||| | ||||| || | | ||||||||| || Sbjct 2145 AGGAACCGGAGAAAAAGACACCTTCAATGGAGGCAAAGGCAACTAGTCTTTCACCAAACA 2086 Query 13314 TACTATTTTTACTCTCTA-TCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTC 13372 | | ||| | |||| || ||||| | || || | || | ||| Sbjct 2085 -AGGCGTCAGCGTCTTGAATCCATCTTAAAGCCCATTCGGCCTTCTC----ACCGATTTC 2031 Query 13373 ----ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGT 13428 || | | || || || || || | | |||| ||| ||| || ||||| Sbjct 2030 TGGGATGGTGTGAATGGCATTGAACAAGAATTCACTTTCTTTAGGGTCCTTGATGTAAGT 1971 Query 13429 ATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATA 13488 ||| ||||| ||| || |||| || ||||||||||| ||| ||||||||||| || Sbjct 1970 ATCGATCAACAAGGAGTAAGTTTCAGAGTGAATATTTTCAATCATGATTTGGAAACCGTA 1911 Query 13489 AAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTT 13548 |||| | ||||||| | || ||||||| | | || |||| | |||||||| || Sbjct 1910 GAAACTCTTTGCCTCTGGAATTTGGACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATT 1851 Query 13549 AACTATCCCGTCACTAGCAGCaaaaaaaGCAAG---TATGTGCTTAATAAAt---ttttt 13602 ||| || |||||| ||| || ||||| ||||| | || | | |||| | || Sbjct 1850 AACAATACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTGGAAATGAAAAATCTCTCGTT 1791 Query 13603 ttCGTT--TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCA 13660 |||||| ||||| || ||| || | | ||| || || ||||| | || ||| Sbjct 1790 TTCGTTCATTCTG-----TTGTTCCAGTCATGGATATCCTTAGACAAATCAATTTCTTCA 1736 Query 13661 ACGGTCCAAAAAGAAGC 13677 ||||||| |||||||| Sbjct 1735 GCGGTCCAGAAAGAAGC 1719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430966442607276