Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001634645.1_202016-05- 11] 32 sequences; 12,377,172 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 145 1e-29 seq15 118 2e-21 seq9 114 2e-20 >seq12 Length=1070766 Score = 145 bits (160), Expect = 1e-29 Identities = 175/238 (74%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||| || |||||||| ||||| ||||| | | Sbjct 54132 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 54073 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || |||||||||||| || |||||||| || || || || Sbjct 54072 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 54013 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || || ||| | || || || |||| | |||||||| Sbjct 54012 CAAAGATTGATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 53953 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| || || ||||||||||| || | || |||||||||| ||| || Sbjct 53952 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGGTATGCAAATTT 53895 Score = 136 bits (150), Expect = 6e-27 Identities = 173/238 (73%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || |||||||| || |||||||| ||||| ||||| | Sbjct 53904 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 53845 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | ||| ||||||||||||||||||||||| || || |||||| Sbjct 53844 GACACTATTGACAACGTCAAAAGTAAAATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 53785 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | |||||||| || || ||| |||| ||| || |||| || || || || Sbjct 53784 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 53725 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || ||||| ||||| ||| | || ||||| || | | |||||||||| ||| || Sbjct 53724 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGACTGAGAGGTGGTATGCAAATTT 53667 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | |||||||| ||||| || |||||||| ||||| ||||| | | Sbjct 53676 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 53617 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| || | || |||||||||||| || |||||||| || || || || Sbjct 53616 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 53557 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | |||||||| || || ||| |||| ||| || |||| | || || ||| Sbjct 53556 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 53497 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 |||||||| || || ||| | || | || || | || | ||||||| Sbjct 53496 ATTCAAAAGGAGTCCACTCTTCACCTCGTCTTGAGGTTGAGGGGTGGTA 53448 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| | || || ||||| ||||| | || ||||| | Sbjct 54588 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 54529 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || || | || |||||||||||| || |||||||| || || |||||| Sbjct 54528 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 54469 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| | || ||||| || || || |||| || || |||| | ||||| || Sbjct 54468 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 54409 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || || ||| | || || | || |||||||||| Sbjct 54408 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGGTAT 54359 >seq15 Length=1063911 Score = 118 bits (130), Expect = 2e-21 Identities = 360/556 (65%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 205318 CtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCA 205377 ||||| || |||| ||| || ||||| |||| | | | ||||| ||| || || Sbjct 452004 CTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATTTCTGGAGATTTGTTCTTTCAAGGCA 452063 Query 205378 TTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTT 205437 | ||| || | ||| | |||||||| || | | ||||||| || ||| ||| | Sbjct 452064 TCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACTCACCTGGCTCC 452123 Query 205438 AAATTAGTTAAATGT-GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGG 205496 | | | || | | |||||||| |||||| ||| ||| |||| |||||||| Sbjct 452124 ATGTC-GACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAATGTTAAATGG 452182 Query 205497 TACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAG------------ 205544 ||| || || ||||||||| || | ||| |||| | |||| ||| Sbjct 452183 TACTCCCAACCCCATATCACAAGAACGTTGGTACAATAAGCATGAAAGGCGGGGCTTACC 452242 Query 205545 --ATATTTATTATTAATT----------ACATGAAATTGTACAAAACAATGACAAGGTGG 205592 || || | || || |||| || ||| |||| ||| || ||||| Sbjct 452243 GGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAAATATGGCATGGTGG 452302 Query 205593 TATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTC 205652 | | |||| || |||| ||| || |||||||| | | || || ||||| | Sbjct 452303 CAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATGATTCTTCTATCGTA 452362 Query 205653 AGGtttattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATA 205712 || || | |||| ||||| |||| ||| | |||||||||| ||||| ||||| Sbjct 452363 GGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATACCTTGTCCAGTATA 452422 Query 205713 ATTTGTATC-CATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTG 205771 | ||| || || | ||||||||||||||||| | ||||||||| |||||||| | Sbjct 452423 GTCGTCATCGCACGTCT-TGTATTTAGCACCAAAATGCCTCCATTGAAATCCATAAACGG 452481 Query 205772 GACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttttttATATATTTTAATGATC 205831 | || | ||| ||| |||| ||||| || || || || | || ||||| |||| Sbjct 452482 GCCCCAGATCTCCTACTTTCCTATCTTTGAACCCCATCTTATCTAAATATTCACGAGATC 452541 Query 205832 CATTTTCATCCCAAAT 205847 |||| | |||||||| Sbjct 452542 CATTACCGTCCCAAAT 452557 >seq9 Length=461146 Score = 114 bits (126), Expect = 2e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 124548 TTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATT 124607 ||| | ||||| | || || || || || ||| | || ||||| | ||| || ||| Sbjct 88421 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 88480 Query 124608 TCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTT 124667 ||| | || || |||||||| || |||||||| |||||||| |||||||| | Sbjct 88481 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 88540 Query 124668 ATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAA 124727 || ||||| || || ||||| || || || |||| || || || || ||||||||| Sbjct 88541 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 88600 Query 124728 GAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||| || || || | || |||||||||| Sbjct 88601 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGGTAT 88641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755455697817600