Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001634645.1_202016-05-
11] 32 sequences; 12,377,172 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq12 114 3e-20
>seq12
Length=1070766
Score = 114 bits (126), Expect = 3e-20
Identities = 166/233 (71%), Gaps = 6/233 (3%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | || || || || ||||| | ||| || || || || || || || |
Sbjct 54362 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 54421
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365
||||| | |||||||||| || || || || ||||||| | |||||| |||||
Sbjct 54422 AGCGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGA---TCTGGA 54478
Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423
||| ||||| || || || ||||||| || ||||| || || | |||| |||||
Sbjct 54479 GGGATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCA 54538
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476
||||| | || || || || ||||||| |||||||||||| |||||||| ||
Sbjct 54539 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATAAT 54591
Score = 113 bits (124), Expect = 1e-19
Identities = 140/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || ||||||| ||| || || || ||
Sbjct 53713 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAA 53772
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
|||| | ||||||| ||||| ||||||||||| || ||||| ||| |||||
Sbjct 53773 AATCAATCTCTGTTGATCCGGAGGGATACCTTCTTTATCTTGAATTTTACTTTTGACGTT 53832
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| ||| ||||| || || || || || |||||||| || ||||| |||||
Sbjct 53833 GTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGAC 53892
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 53893 GAAAATTTGCAT 53904
Score = 107 bits (118), Expect = 5e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||| | | || | || ||||||| || || || || ||
Sbjct 54169 TTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCATCTTCTAGCTGCTTACCGGCAAA 54228
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| | ||||||| ||||| ||||| || ||||||||||||| || |||||
Sbjct 54229 GATCAACCTCTGTTGATCCGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTT 54288
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| || | ||| ||||| || || | ||||| || || ||||||| |||||| ||
Sbjct 54289 ATCGATCGTGTCGGAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAAC 54348
Query 288462 GAATATCTGCAT 288473
|| ||||||||
Sbjct 54349 AAAGATCTGCAT 54360
Score = 104 bits (114), Expect = 6e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
||| |||||||| || ||||||| | || | || ||||| ||||| || || || ||
Sbjct 485539 TTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAA 485480
Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401
||||| | ||||| | ||| || ||||| || || ||||| || | || || ||
Sbjct 485479 GATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGACTTGACATT 485420
Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461
|| |||| || ||||| ||||| || || || ||||| ||||| | |||||||||
Sbjct 485419 GTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGAC 485360
Query 288462 GAATATCTGCAT 288473
||| || |||||
Sbjct 485359 GAAAATTTGCAT 485348
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179653916341696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |