Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001669995.1_202016-06- 20] 17 sequences; 12,114,499 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq12 152 5e-32 seq9 118 1e-21 seq11 100 3e-16 >seq12 Length=1077751 Score = 152 bits (168), Expect = 5e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| ||||||||| ||||| ||||| || || || | | Sbjct 64432 AAAATTTGCATACCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATG 64491 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 |||||||| || || | || ||||| || || ||| |||| || |||||||| Sbjct 64492 TTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGT 64551 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 |||||||||||||||||||| ||||| | |||||||| ||||||| | | | |||||| Sbjct 64552 TGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTTGACTTGACGTTGTCAATAGTGTCG 64611 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 64612 GAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64670 Score = 152 bits (168), Expect = 5e-32 Identities = 177/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | | Sbjct 64660 AAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATG 64719 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || || || || | || || ||||| || ||| ||||||| || || || Sbjct 64720 TTGTAGTCAGACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAAGATCAACCTCTGT 64779 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| |||||||| ||||| | ||||| | ||| ||| ||| ||||| Sbjct 64780 TGATCTGGAGGGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCG 64839 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||||| || || | ||| || |||||||||||||| Sbjct 64840 GAGGATTCAACCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 64898 Score = 122 bits (134), Expect = 8e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || |||||||||| |||||||||||| | ||||||||||||||| | Sbjct 64203 AAAAATTTGCATACCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGAT 64262 Query 94828 GTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTG 94887 ||| || || || || | ||| || || || || || |||| || ||||| || Sbjct 64263 GTTGTAGTCAGACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTG 64322 Query 94888 CTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTC 94947 ||||| ||||| ||||||||||| || | ||| || |||||| | | | |||||| Sbjct 64323 TTGATCCGGAGGGATACCTTCTTTATCTTGAATCTTACTTTTGACGTTGTCAATAGTGTC 64382 Query 94948 AGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || || || || || || |||||||| || || || ||||| Sbjct 64383 GGAAGATTCAACCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64442 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| |||||||| | ||||||||||||||| | ||| || ||| | Sbjct 499092 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 499033 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||| || || || ||||||| |||||||| || || || ||| Sbjct 499032 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 498973 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | || || | |||||| | | | |||||||| || || Sbjct 498972 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 498913 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || | ||| || || || || ||||| Sbjct 498912 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 498866 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || ||||| | ||| || | ||| | ||| || |||||||| | || || || | Sbjct 63988 CCACCCCTCAACCTCAAGACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 64047 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | ||| || || || || ||| |||| || ||||||||||| ||||||||| Sbjct 64048 AGCGTTCTACCATCTTCTAGTTGCTTACCGGCAAAAATCAATCTTTGCTGGTCTGGAGGA 64107 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | |||||| | ||| ||| | | | |||||||| || || Sbjct 64108 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 64167 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || || || || || || || || || ||||| || ||||| Sbjct 64168 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 64214 Score = 102 bits (112), Expect = 7e-17 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || || || || ||||| || | ||| ||||| || || | || || | Sbjct 64919 CAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCTTCTA 64978 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 |||| || ||| ||||||| |||||||| ||||||||||| |||||||| ||||| | || Sbjct 64979 GCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGAA 65038 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 |||| | ||| ||| | ||| || || | || || || | || |||||||| | Sbjct 65039 TTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTAC 65098 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | ||| || || || |||||||| Sbjct 65099 CGGTCAAAGTCTTGACGAAAATCTGCAT 65126 >seq9 Length=431562 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| ||| || ||||||||||| ||||| ||||| | ||| || || | Sbjct 61610 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 61551 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | || | || |||| || || || ||||||| |||||||| || || || || Sbjct 61550 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 61491 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| ||||| | ||| |||| |||||| | | | |||||||| || || Sbjct 61490 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 61431 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 || | |||||||| || ||||| | ||| || ||||| Sbjct 61430 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 61393 >seq11 Length=665026 Score = 100 bits (110), Expect = 3e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| ||| ||||| || ||||| ||||||||||| | ||| || | | Sbjct 617302 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGT--CAG 617359 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 |||| ||| | || |||| || || || ||||||| |||||||| || || || | Sbjct 617360 ATAGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 617419 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | |||||||| ||||| | || || | |||||| | | | ||||||| || | Sbjct 617420 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAA 617479 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAG 94999 | || | |||||||| || ||||| | ||| || || ||| Sbjct 617480 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAG 617520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448291104738120