Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001670085.1_202016-06- 20] 17 sequences; 12,135,904 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq12 123 2e-23 seq9 96.9 3e-15 >seq12 Length=1077601 Score = 123 bits (136), Expect = 2e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || ||||||||| |||| || || || || ||| | || || || | Sbjct 64523 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 64464 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || || ||| ||||| ||||| | || |||||| Sbjct 64463 GACACTATTGACAACGTCAAGTNNAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 64404 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | |||| ||| ||||| || ||||| || | ||||| || | ||||| ||| Sbjct 64403 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 64344 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| ||||||||||| ||||||| ||| || |||| || Sbjct 64343 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 64297 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || |||||||| || ||||| ||||||||||| || || |||||| | ||| || || Sbjct 498716 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 498775 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| | | | | || || ||||| ||||| ||||| | || || Sbjct 498776 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 498835 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||||||| | || | ||| ||||| || |||| |||| ||||| || | || ||| Sbjct 498836 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 498895 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| ||||| |||||||| | ||| |||| || ||| || |||| || Sbjct 498896 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 498945 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| ||||| ||||| |||||||| || | ||| || || | Sbjct 64979 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 64920 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || || ||| ||| ||||| ||||| | || |||||| Sbjct 64919 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 64860 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 |||||| | || | ||| ||||| ||||| || || | ||||| || | ||||||||| Sbjct 64859 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 64800 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || || || || || | ||| |||| || |||| || Sbjct 64799 ATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 64753 >seq9 Length=437070 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 110282 TTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGACGATACTGTC 110341 |||||||| ||||| || || || ||||| || | ||| || || || ||| | Sbjct 68602 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 68661 Query 110342 GGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTT 110401 | | | || || |||||| ||||| ||||| | || || ||||||||| | Sbjct 68662 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 68721 Query 110402 ATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAA 110461 || | ||| ||||| || |||| || | ||||| || | || ||||||||||||||| Sbjct 68722 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 68781 Query 110462 GAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || |||||| | || || ||| || |||| || Sbjct 68782 GAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 68819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412841514464381