Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001670235.1_202016-06- 20] 17 sequences; 12,121,746 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq12 131 1e-25 seq9 118 8e-22 seq11 111 1e-19 >seq12 Length=1075190 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || | ||||| ||||| || ||||| |||||||| || | Sbjct 63964 CCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 64021 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | ||||||| ||| || ||||| | ||||| | |||||| || | Sbjct 64022 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 64081 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||| || | || ||||| ||| | ||| | Sbjct 64082 GGATACCTTCTTTATCTTGAATNTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 64141 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 64142 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 64191 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || || ||||| || ||||| |||||||| ||| Sbjct 498840 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 498781 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| ||||| || ||||| | ||||| | |||||||| |||| Sbjct 498780 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 498721 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || ||||| || | ||| || Sbjct 498720 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 498661 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | |||||| || ||||| || | ||| || || ||||||||||| || Sbjct 498660 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 498611 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || ||||| | ||||| ||||| || ||||| ||||| Sbjct 64192 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 64251 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || || || | ||||| | ||||| || ||| Sbjct 64252 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGA 64311 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || ||||| || | ||| || Sbjct 64312 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 64371 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || ||||||||||| || || || |||||||||||| Sbjct 64372 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACNAAAATTTGCATA 64419 Score = 118 bits (130), Expect = 8e-22 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || ||||| ||||| || ||||| |||||||| || | Sbjct 64420 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 64477 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||||| || || || || | ||||| | |||||| || | Sbjct 64478 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAANATCAACCTCTGTTGATCTGGAG 64537 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||||| || || | || || || ||| ||| | Sbjct 64538 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCNA 64597 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || ||||||||||| |||| ||| || ||||| || |||||| Sbjct 64598 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCATA 64647 Score = 109 bits (120), Expect = 4e-19 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| || || || | ||||| || || || ||||| || ||||| || Sbjct 63736 CCACCCCTCAACCTCAAGACNAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 63795 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||||| ||| || || || | ||||| | || ||||| ||| Sbjct 63796 AGCGTTCTACCATCTTCTAGTTGNTTACCGGCAAANATCAATCTTTGCTGGTCTGGAGGA 63855 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || ||||| || | ||| || Sbjct 63856 ATACCTTCCTTGTCTTGAATTTTNGANTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 63915 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || |||||||| ||||| || || |||||||||||| Sbjct 63916 TCTAGGGTTATAGTCTTACCTGTTAGAGTCTTGACGAAAATTTGCATA 63963 Score = 102 bits (112), Expect = 6e-17 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 64648 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 64707 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 64708 AGCGTTCTNCCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 64767 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || |||||| | ||| || Sbjct 64768 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 64827 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| |||| ||| || || ||||| |||||| Sbjct 64828 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATA 64875 >seq9 Length=438784 Score = 118 bits (130), Expect = 8e-22 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || ||||| || | || || |||||||| |||||||| || | Sbjct 68675 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA--G 68618 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| ||||| || ||||| | ||||| | |||||||| || Sbjct 68617 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 68558 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || ||| | || ||||| || | ||| | Sbjct 68557 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 68498 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 | || || || ||||| ||||| |||| ||| || |||||| Sbjct 68497 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 68457 >seq11 Length=664921 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || || ||||| | || || || ||||| |||||||| || Sbjct 617319 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 617378 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| ||||| || ||||| | ||||| | |||||||| ||| Sbjct 617379 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 617438 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || || | ||| || Sbjct 617439 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 617498 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 || || || ||||| ||||| |||| ||| || || || | | || | ||| ||||| | Sbjct 617499 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAGCTGTACAAAATTGGAATAAGT 617558 Query 15190 T 15190 | Sbjct 617559 T 617559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391925952845