Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001670235.1_202016-06- 20] 17 sequences; 12,121,746 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq12 174 4e-38 seq9 159 8e-34 seq11 158 3e-33 seq2 91.5 4e-13 >seq12 Length=1075190 Score = 174 bits (192), Expect = 4e-38 Identities = 170/219 (78%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| ||||| ||||| ||||||| ||||| |||| ||||||||| || Sbjct 498829 TCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACC 498770 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||| | ||||| ||||| ||||| | || ||||||||| || |||||||||||||| Sbjct 498769 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTT 498710 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || || ||||| || | ||| || || | || || Sbjct 498709 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAAT 498650 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || ||||| || | ||| | |||||| || Sbjct 498649 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 498611 Score = 143 bits (158), Expect = 6e-29 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||| ||||| ||||| ||||||| ||||| || | ||| ||||| || Sbjct 64431 TCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 64490 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||||||||| || || || || | | ||||| || || || ||||||||||| Sbjct 64491 GTCTTCTAGCTGCTTACCGGCAAANATCAACCTCTGTTGATCTGGAGGGATACCTTCCTT 64550 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| ||||| || ||| || ||||| ||||| |||| ||| || ||||| ||||| Sbjct 64551 GTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCNACCTCTAAAGTGAT 64610 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 || || || |||||||| || Sbjct 64611 GGTTTTACCGGTCAAAGTCTT 64631 Score = 140 bits (154), Expect = 8e-28 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225499 CTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCA 225558 |||| ||| ||||| |||||||| || ||||| | |||||| || | || ||||| ||| Sbjct 63748 CTCAAGACNAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCA 63807 Query 225559 TCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG 225618 |||||||| || || || || || || | || ||| ||||| || ||||||||||||||| Sbjct 63808 TCTTCTAGTTGNTTACCGGCAAANATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTG 63867 Query 225619 TCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATC 225678 ||||| || || || || || || ||||| || | ||| || |||| || || Sbjct 63868 TCTTGAATTTTNGANTTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATA 63927 Query 225679 GTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | ||| || | ||| | |||||| Sbjct 63928 GTCTTACCTGTTAGAGTCTTGACGAAAATTTGCAT 63962 Score = 134 bits (148), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || ||||| ||||| ||||| ||||||| ||||| || | ||| ||||| || Sbjct 63975 TCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACC 64034 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||||| ||||| ||||| || || | || ||||| || || || |||||||| || Sbjct 64035 ATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGGATACCTTCTTT 64094 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||| || || || || || || ||||| || | ||| || |||| || || Sbjct 64095 ATCTTGAATNTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTAT 64154 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || | |||||| | ||| | |||||| Sbjct 64155 AGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64190 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 225496 AGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTC 225555 || || || ||||| || | ||||| || || || | |||||||| | || ||||| Sbjct 64657 AGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGACAGCGTTCTN 64716 Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 || |||||||||||||| || || ||||| | || |||||| || || || ||||||||| Sbjct 64717 CCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCC 64776 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| || || ||| || |||||||| || || | ||| || || || || Sbjct 64777 TTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTT 64836 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || |||||||| || | ||| | ||||| Sbjct 64837 ATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 64874 Score = 109 bits (120), Expect = 1e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || ||||| || | || ||||| | || ||||| || ||||| || ||||| || Sbjct 64222 GTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCTTCCAGTTGCTTACCG 64281 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| | || |||||| || || |||||||||||||||||||| || || ||| Sbjct 64282 GCAAAGATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGTCTTGAATTTTCGACTTA 64341 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || ||||| || | ||| || |||| || || ||||| || |||| || Sbjct 64342 ACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCAGTGTC 64401 Query 225697 TTTATGAACACTTGCAT 225713 || | || | |||||| Sbjct 64402 TTGACNAAAATTTGCAT 64418 >seq9 Length=438784 Score = 159 bits (176), Expect = 8e-34 Identities = 156/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | ||| | ||||||||||||||| | ||||| || | ||| ||||| || Sbjct 68664 TCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACC 68605 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 68604 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 68545 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| |||||| ||| ||| || || ||||| || | ||| || || || ||||| Sbjct 68544 GTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGAT 68485 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || |||||||| || Sbjct 68484 GGTCTTACCAGTCAAAGTCTT 68464 >seq11 Length=664921 Score = 158 bits (174), Expect = 3e-33 Identities = 159/207 (77%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || | ||||||||| ||||||| ||||| || | | |||||| || Sbjct 617330 TCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAGAGTTCTACC 617389 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || ||||||||| || || ||||||||||| Sbjct 617390 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 617449 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||| || |||||||| || | ||| || || || ||||| Sbjct 617450 GTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGAT 617509 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAA 225704 ||||| || |||||||| || | ||| Sbjct 617510 GGTCTTACCAGTCAAAGTCTTAACGAA 617536 >seq2 Length=811774 Score = 91.5 bits (100), Expect = 4e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || |||||||| || || |||||||| || |||||||| Sbjct 37419 GAAAATTTGACCATCGGTAATGGAAATAACATTGGTTGGAATATAAGCGGAGACATCACC 37360 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCA 4569 |||| ||||| | |||||| || || |||| || ||| Sbjct 37359 ACCTTGGGTTTCAATAACAGGCAAAGCAGTTAAAGAACCA 37320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530940251798