Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001670295.1_202016-06- 20] 17 sequences; 12,123,099 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq12 118 9e-22 seq9 84.2 2e-11 >seq12 Length=1077392 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25032 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 25091 || |||||||| ||| |||| || || || || || || |||||| ||| ||| | Sbjct 498478 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 498537 Query 25092 GCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 25151 | || || | | | || ||||| || || || || |||||| | || || Sbjct 498538 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 498597 Query 25152 CAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTAC 25211 ||||||||| | |||||||| || || |||||||||||| | |||| || |||| ||| Sbjct 498598 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 498657 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || || ||||||||||||||||| ||| |||| || |||| |||| || Sbjct 498658 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 498707 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || || || || || ||| || ||| | | Sbjct 64057 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 63998 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | |||| || ||| |||||||||||| | || |||||| Sbjct 63997 GACACTATTGACAACGTCAAAAGTAAGATTCAAGATAAAGAAGGTATCCCTCCGGATCAA 63938 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | || ||||| || || ||| | |||||| | ||| || | || ||||| Sbjct 63937 CAGAGATTGATTTTTGCTGGTAAGCAACTAGAAGATGGTAGAACCTTGTCTGACTACAAC 63878 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||||||||||||| ||||||| |||| |||| || Sbjct 63877 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 63831 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| | || || || || || ||| || ||| | | Sbjct 64285 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 64226 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | ||||| ||||||| || || |||||| | || ||||||| Sbjct 64225 GACACTATTGACAACGTCAAGTCAAAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAA 64166 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 |||||| | || ||||| || || ||| ||||||| | ||| || | ||||| || Sbjct 64165 CAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 64106 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || || ||||| | || ||||||| |||| |||| || Sbjct 64105 ATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 64059 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| || |||||||| || || ||| || | Sbjct 64513 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 64454 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | | | ||| ||||| || || |||||| | || ||||||| Sbjct 64453 GACACGATCGATAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAA 64394 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | |||||||| || || || | ||||| | ||| || | || ||||| Sbjct 64393 CAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAAC 64334 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 || ||||||||||||||||||||| ||||||| |||| |||| || Sbjct 64333 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 64287 >seq9 Length=437935 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25048 TCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCAGAGACGGTGGCCG 25107 |||| || ||||| || || ||||| || ||| ||| | | || || | | | Sbjct 67768 TCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATTGACA 67827 Query 25108 ATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCT 25167 || ||||| ||| ||| || || |||||| | || || ||||||||| | |||| Sbjct 67828 ATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCT 67887 Query 25168 TTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAAT 25227 |||| || || ||||||||||| | ||| || | || ||||| |||||||| |||| Sbjct 67888 TTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAAGAAT 67947 Query 25228 CTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 | ||| | ||| | || || |||| |||| || Sbjct 67948 CCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 67981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796714888038