Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001670385.1_202016-06-
20] 17 sequences; 12,119,368 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq12 140 3e-28
seq9 134 1e-26
seq11 118 9e-22
>seq12
Length=1077483
Score = 140 bits (154), Expect = 3e-28
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||||||||||||||| |||| ||| | ||||| || || ||
Sbjct 64870 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 64811
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | ||| | |||| ||| ||||| ||||| || || || || ||
Sbjct 64810 GATACCATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATCCCTCCAGATCA 64752
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | || |||||||| || || ||||||| | | | || || ||||||||
Sbjct 64751 ACANAGNTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAA 64692
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| || || ||||| ||||| | ||||||||||||||||| ||
Sbjct 64691 CATTCAGAAGGAGTCCACCTTACATCTTGTGCTAAGGCTAAGAGGTGG 64644
Score = 138 bits (152), Expect = 1e-27
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||||| |||||||| | || || | ||||| || || |||
Sbjct 498610 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCTTCT 498669
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
|||||||| || || || ||| || ||| ||||| ||||| |||||||||||||
Sbjct 498670 GACACTATTGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGACC 498727
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
|||| | | || ||||| || || ||||| ||||||| | | ||| || ||| ||||
Sbjct 498728 AACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTACA 498787
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
| || ||||| ||||| || ||||| || || | || | ||||| ||
Sbjct 498788 ACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 498836
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||||||||||||||| ||||||| | || || || || ||
Sbjct 64642 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATCACTTTAGAGGTTGAATCCTCC 64583
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| | || | ||| |||||| ||||| ||||| || || || || ||
Sbjct 64582 GACACGATCGA-TAACGTTAAGTCGAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCA 64524
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|||| || | || |||||||| || || ||||||| | | | || || || |||||
Sbjct 64523 ACAGAGGTTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACCTTGTCTGACTACAA 64464
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| ||||| || || || || ||| | || | ||||| ||
Sbjct 64463 CATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 64416
Score = 118 bits (130), Expect = 9e-22
Identities = 150/204 (74%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| |||| ||||| | || || | || || || || |||
Sbjct 63958 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 63899
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|||||||| || | ||| | |||| ||| ||||| ||||| ||||| || |||||
Sbjct 63898 GACACTATTGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGACCA 63840
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| | | ||||||||||| || ||| ||||||||| | | || || || |||||
Sbjct 63839 GCAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAA 63780
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||||||||| || ||||| || ||
Sbjct 63779 TATTCAAAAGGAGTCCACTCTTCA 63756
Score = 116 bits (128), Expect = 3e-21
Identities = 164/228 (72%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| |||| ||||| | || || | || || || || |||
Sbjct 64414 ATGCAAATTTTTGTCAAGACACTGACAGGTAAGACTATAACCCTAGAGGTTGAATCTTCT 64355
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | ||| | |||| ||| ||||| ||||| ||||| || || ||
Sbjct 64354 GACACTATCGACAACGTTAAGTCGAAAATTCAA-GACAAGGAAGGTATTCCTCCAGATCA 64296
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| | | ||||||||||| || ||| | ||||| | | | || || ||||| ||
Sbjct 64295 ACAAAGATTGATTTTTGCCGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAA 64236
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||| ||||| || ||| | ||||| ||| | || | ||||| ||
Sbjct 64235 CATTCAGAAAGAGTCTACGTTGCATTTGGTGTTGAGATTGAGAGGTGG 64188
>seq9
Length=437878
Score = 134 bits (148), Expect = 1e-26
Identities = 165/221 (75%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
||||| ||||||||||| ||||| ||||||| | ||||| || || |||||||||||
Sbjct 67732 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 67791
Query 25068 GAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGG 25124
|| || || ||| |||| | ||| ||||| ||||| || |||||||||||||| |
Sbjct 67792 GA--CAATGTCAAGTCAAAGATTCA-AGACAAGGAAGGTATCCCACCTGACCAACAAAGA 67848
Query 25125 ATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAA 25184
| || ||||| || || ||||| ||||| | | | || || || ||||| ||||||
Sbjct 67849 TTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAA 67908
Query 25185 AAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
||||||||||| | || ||||| | || | ||||| ||
Sbjct 67909 AAAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 67949
>seq11
Length=666000
Score = 118 bits (130), Expect = 9e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||||||||| ||||| ||||||| | ||||| || || |||||||| ||
Sbjct 617804 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACCATT 617745
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| ||||| ||||| || |||||||||||||| | |
Sbjct 617744 GATAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 617685
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAA 25187
|| ||||| || || ||||| ||||| | | | ||| | || ||||| || |||||
Sbjct 617684 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACTCTATCTGACTACAACATCCAAAAG 617625
Query 25188 GAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||||||| ||||||| || | || ||||||| ||
Sbjct 617624 GAATCCACTTTACATTTGGTCTTGAGATTAAGAGGTGG 617587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327910219855
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |