Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001670845.1_202016-06- 20] 17 sequences; 12,128,365 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq12 129 4e-25 >seq12 Length=1077089 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| |||||||| || | ||| |||||||| | ||||| || ||| Sbjct 63987 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGAC 64046 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || || | ||| || || ||||||||||||| ||||||||| | || Sbjct 64047 AAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 64106 Query 43003 ACACCTTCTTTTTCGCTGATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| ||| |||||| || ||| |||||| || || || Sbjct 64107 ATACCTTCTTTATCTTGAATCTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 64165 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| |||||||| || || ||||||||||| || ||||||||||| Sbjct 64166 CTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 64213 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | ||| |||||||| | ||||| |||||| Sbjct 498863 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 498804 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 498803 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 498744 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 498743 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 498684 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 498683 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 498634 Score = 95.1 bits (104), Expect = 9e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| ||||||||||| | || ||| || || | || ||||| ||| Sbjct 64215 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 64274 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||| ||| || |||||||||||||||| |||||||| | || Sbjct 64275 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGA 64334 Query 43003 ACACCTTCTTTTTCGCTGA----TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 | |||||| || || ||| || || || || || | | ||||| || || Sbjct 64335 ATACCTTCCTTGTC-TTGAATTTTCGAC---TTAACGTTGTCGATAGTGTCAGAAGATTC 64390 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || |||| |||||||| || || || || || || |||||||||||||| Sbjct 64391 AACCTCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCAT 64441 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 8/202 (4%) Strand=Plus/Plus Query 42912 AGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCC 42971 |||| ||||||||| | |||||| || |||| || | | || || | ||| || || Sbjct 63788 AGTGGACTCCTTTTGAATATTGTAGTCCGACAGCGTTCTACCATCTTCTAGTTGCTTACC 63847 Query 42972 GGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA----TCAACT 43027 |||||||||||||| || || || | || | |||||| || || ||| || || Sbjct 63848 GGCAAAAATCAATCTTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAATTTTCGAC- 63905 Query 43028 CTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTA 43087 || || || ||| ||||| || || || |||| |||||||| || || || | Sbjct 63906 --TTAACGTTGTCAATAGTGTCAGAAGATTCAACCTCTAGGGTTATAGTCTTACCTGTCA 63963 Query 43088 GAGTTTTCACAAAAATTTGCAT 43109 | || || |||||||||||||| Sbjct 63964 GTGTCTTGACAAAAATTTGCAT 63985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369520984986