Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20cerevisiae_20[genbank_20GCA_5F001671115.1_202016-06- 20] 17 sequences; 12,125,340 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq12 131 1e-25 seq9 118 8e-22 seq11 111 1e-19 >seq12 Length=1077859 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || | ||||| ||||| || ||||| |||||||| || | Sbjct 64291 CCACCTCTCAATCTCAACACCAGGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 64348 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| | ||||||| ||| || ||||| | ||||| | |||||| || | Sbjct 64349 ACAAGGTTCTACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCTCTGTTGATCCGGAG 64408 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||| || ||||| || | || ||||| ||| | ||| | Sbjct 64409 GGATACCTTCTTTATCTTGAATNTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAA 64468 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | |||| ||| || || || ||||| |||||||| || |||||||||||| Sbjct 64469 CCTCTAGGGTTATAGTCTTCCCTGTTAGAGTTTTGACGAAAATTTGCATA 64518 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || || || ||||| || ||||| |||||||| ||| Sbjct 499167 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 499108 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | |||| | ||||| ||||| || ||||| | ||||| | |||||||| |||| Sbjct 499107 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 499048 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || ||||| || | ||| || Sbjct 499047 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 498988 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | |||||| || ||||| || | ||| || || ||||||||||| || Sbjct 498987 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 498938 Score = 129 bits (142), Expect = 4e-25 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || ||||| | ||||| ||||| || ||||| ||||| Sbjct 64519 CCACCTCTCAATCTCAACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGAC 64578 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||| | ||| || || || | ||||| | ||||| || ||| Sbjct 64579 AGCGTTCTACCGTCTTCCAGTTGCTTACCGGCAAANATCAATCTTTGTTGATCTGGAGGA 64638 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || ||||| || | ||| || Sbjct 64639 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 64698 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || ||||||||||| || || ||||||||||||||| Sbjct 64699 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACAAAAATTTGCATA 64746 Score = 118 bits (130), Expect = 8e-22 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || || || ||||| ||||| || ||||| |||||||| || | Sbjct 64747 CCACCTCTCAATCTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCA--G 64804 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||||| || || || || | ||||| | |||||| || | Sbjct 64805 ACAAGGTTCTACCGTCTTCTAGCTGCTTACCGGCAAANATCAACCTCTGTTGATCTGGAG 64864 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||||| || || | || || || ||| ||| | Sbjct 64865 GGATACCTTCCTTGTCCTGGATTTTCGACTTAACGTTATCGATCGTGTCGGAGGATTCNA 64924 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | ||||| || ||||||||||| |||| ||| || ||||| || |||||| Sbjct 64925 CCTCTAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAAGATCTGCATA 64974 Score = 109 bits (120), Expect = 4e-19 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | ||| || || || | ||||| || || || ||||| || ||||| || Sbjct 64063 CCACCCCTCAACCTCAAGACNAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCCGAC 64122 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | ||||||| ||| || || || | ||||| | || ||||| ||| Sbjct 64123 AGCGTTCTACCATCTTCTAGTTGNTTACCGGCAAANATCAATCTTTGCTGGTCTGGAGGA 64182 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || ||||| || | ||| || Sbjct 64183 ATACCTTCCTTGTCTTGAATTTTNGANTTAACGTTGTCAATAGTGTCAGAAGATTCAACC 64242 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| || || ||||||||||| || || || |||||||||||| Sbjct 64243 TCTAGGGTTATAGTCTTACCTGTCAGTGTCTTGACGAAAATTTGCATA 64290 Score = 102 bits (112), Expect = 6e-17 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | |||| || | ||| | ||| || || || || ||||||||||| Sbjct 64975 CCACCTCTTAGCCTTAGCACAAGATGTAAGGTGGACTCCTTCTGAATGTTGTAATCAGAC 65034 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| ||||||||| || || || || | ||||| | ||||| || || Sbjct 65035 AGCGTTCTNCCGTCTTCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGG 65094 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || | || || |||||| | ||| || Sbjct 65095 ATACCTTCCTTGTCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACT 65154 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||||||||| |||| ||| || || ||||| |||||| Sbjct 65155 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACGAAAATCTGCATA 65202 >seq9 Length=437370 Score = 118 bits (130), Expect = 8e-22 Identities = 160/221 (72%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| |||||| || ||||| || | || || |||||||| |||||||| || | Sbjct 68295 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCA--G 68238 Query 15010 AGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || |||| ||||||| ||||| || ||||| | ||||| | |||||||| || Sbjct 68237 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 68178 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| ||| || || ||| | || ||||| || | ||| | Sbjct 68177 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 68118 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAA 15168 | || || || ||||| ||||| |||| ||| || |||||| Sbjct 68117 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 68077 >seq11 Length=665698 Score = 111 bits (122), Expect = 1e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| || || ||||| | || || || ||||| |||||||| || Sbjct 617298 CCACCTCTTAATCTCAAGACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 617357 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| |||| ||||||| ||||| || ||||| | ||||| | |||||||| ||| Sbjct 617358 AGAGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 617417 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || || || | ||| || Sbjct 617418 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACT 617477 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAAAT 15189 || || || ||||| ||||| |||| ||| || || || | | || | ||| ||||| | Sbjct 617478 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAAGCTGTACAAANTTGGAATAAGT 617537 Query 15190 T 15190 | Sbjct 617538 T 617538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391925952845